BAC Information

Click to search

BAC

Clone NameMSMg01-098L24
Chromosome17 (Build37)
Map Location 47,679,040 - 47,679,324
singlet/doubletsinglet
Overlap geneCcnd3
Upstream geneParc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn
Downstream geneBysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098L24.T7 (MSMg01no098_l24.b1)MSMg01-098L24.TJ (MSMg01no098_l24.g1)
ACCAG314851AG314852
length692807
length of high quality
(start - end)
243 (51 - 293)286 (132 - 417)
definitionCHROMAT_FILE: MSMg01no098_l24.b1 PHD_FILE: MSMg01no098_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:57 2005CHROMAT_FILE: MSMg01no098_l24.g1 PHD_FILE: MSMg01no098_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGGATTTCGGAGCGGAGGCGCGGAATTCCAGGACTGACAAAGCAACAC
AGAGAAACCCTGTCTCGAAAAGAAAACAAAAAACAAACAAACAAACACCA
AACACTCTTAAGAGGGCCAGCTGGGTCTTAAAGGGCAGAGTGTGGTGGCA
CACACCTTTAGTCCCAGCACTGGGGAGGCAGAGACAGCTGGATTTCTGTG
AGTTTGACCAGGCCAACCTGGTCTATATATGAGCTCCAAGACAGCTGGGG
CTACATAGTGAAACTCCATCTCAATAACCAAAACAAGCCTCCTAAATCCT
TTACAATACCACTTTGAACTTACACATATATTGATTTATGCACCACCCCC
TTCTAAGTGCCTCTTACATGTCAAAAGTTAAGTTTAAATAGAACTTTTTT
CTTATTTTTAATTTAAAAAGTATGTTTTTGGGGCTGGAGAGATGGCTCAG
CTGGTTAAGAGCACTGACTGCTCTTCAGAGGTCCTGTAGTTCATTCCCCA
GCAACTATCTGGTGGTTCACAACCATCTGCCATGGGATCCGACGCCCTCA
GGTGTTATCTGGCGCCAGCTACCGTGTACTTGTATAATTAAATATACCCC
TACCAATTTTTACCCTGAATGCATGAGTTTTGTTTGTTTCTCTGCCTCCC
GAATATCGCGTGCGTCCTAGGAAGTCCGACTCCCGTATGCTA
TTTTTTTTTTTTTTTNTTTNTTNNNTTTTTTTCCCCCCAACCNCCTCTTT
ACTTAAAACTATGATANGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGTACAGATGACAGCC
ATGTCTGGTTCAGTGCTTGAAAGTCCCACCCACACAACCACAGGCAACTT
TGCCCTGGGGTGACTGAAGACAGTTGCACCACACCCCCAGAGGAGCCCAG
CTGTCTCTGCTTGCCCTCATTCAGCCACCTGAACTCATTCACTGTTTTCC
TGTCAGTTGGTCCATGCTTGGGAAGAGGCCCCTGTGGGTGGTGAGGGGCC
GTGTGTTTCATTTGCTGTGGGGTTCGTTGTCTTTCCTCAGGCTTTATCAG
AACAGGTGCCGGCCAATCAGCTGGCTGAAATGAGGACAATCTTCCCTTCC
CACCTGTTCCTTGTCCCCCTCCACCCCCCATACAATTACTTCCCCCTTCC
CATCCTTATCTTAGTTTTATTATAATTTTCTCTCTTTTTCACCCTCCATT
CTATATGATTTCCATTGTTTTCTGACACATTGCCCTGATACTGTATGACC
CTTGCTTAATTTTTTCTTATTCTTTCTTGCTCTACCTTGCTCACCTTCCC
ATTTTTTTTCTCCTCAATGTTTTCATATTATACATTTCTCATACTATTAA
ATCTTATCATTACTTTTGTATTCCTTCCATCCATTCATTTATCCAACCCA
TTACTTTTTTCACTTTTATTTTACAAATTATCCCAACCCTTTAACTCCTT
ATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_l24.g1 MSMg01no098_l24.g1 CHROMAT_FILE:
MSMg01no098_l24.g1 PHD_FILE: MSMg01no098_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:57 2005
         (286 letters)



>mm_chr17_47678840_47679525
          Length = 686

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggtacagatgacagccatgtctggttcagtgcttgaaagtcccacccacacaaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggtacagatgacagccatgtctggttcagtgcttgaaagtcccacccacacaaccac 260

                                                                       
Query: 61  aggcaactttgccctggggtgactgaagacagttgcaccacacccccagaggagcccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaactttgccctggggtgactgaagacagttgcaccacacccccagaggagcccagc 320

                                                                       
Query: 121 tgtctctgcttgccctcattcagccacctgaactcattcactgttttcctgtcagttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tgtctctgcttgccctcattcagccacctgaactcattcactgttttcctgtcagttggg 380

                                                                       
Query: 181 ccatgcttgggaagaggcccctgtgggtggtgaggggccgtgtgtttcatttgctgtggg 240
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 381 ccatgcttgggaagaggcccctgtgggtggggaggggctgtgtgtttcatttgctgtggg 440

                                                        
Query: 241 gttcgttgtctttcctcaggctttatcagaacaggtgccggccaa 285
           ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gttcggtgtctttcctcaggctttagcagaacaggtgccggccaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)