BAC Information

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BAC

Clone NameMSMg01-098P16
Chromosome17 (Build37)
Map Location 48,891,858 - 48,892,106
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P16.T7 (MSMg01no098_p16.b1)MSMg01-098P16.TJ (MSMg01no098_p16.g1)
ACCAG315022AG315023
length799791
length of high quality
(start - end)
249 (129 - 377)259 (137 - 395)
definitionCHROMAT_FILE: MSMg01no098_p16.b1 PHD_FILE: MSMg01no098_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:15 2005CHROMAT_FILE: MSMg01no098_p16.g1 PHD_FILE: MSMg01no098_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCTTTCCCCTCCCCCCCCCCCCCCTTCCCCCTTTTCCCCATTTTTT
TCCCCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACCTCTAACCCCTGGAGCCTGCCAAAGAAGAACTGC
TGAACTTTCTAAATGACCCAGAACTGCTGAGAGCAAGAATTATGCCTTCC
CCCATCTCTTCCCAATCTTTGAACAAAATTAAGATCGTTTCCAAAAATAC
TCACTGAATACACGCACAGAGGTGAATGAGCGAGGCCTTTATACAGAGGT
TTGGGGGGCTCTGTCATTGGAGATCATCTGCTTCCTCTTTCTTGTTGGAG
GGCTCCACAGTAAAACAGTGAGGAGGGTTTCAAGGGATATATCAGCTACT
GGCGCCGGAGCCTTGACTGCAATGCGCCTTCGATAAACATCTGCTAAATT
AATGAGTCAATCGACTCTGTTCCCCATCGAAAATGGTACGAGTAAGTATG
CTTGCCCGTAAGAAAGGCTTAGATCCTGACTGACGAGAGGTATAAAGAAA
GAAAGATAGAAAGAAAGATAGAAAGATAGACCGAAAGAAAGAAAGAAAGA
CGGAGGTAGCCAGGCAGCCATTGTATTTTTTTCTTTTCTTCCCCCCTCCC
CCCTTCTTCTTTTCTTTCCCCTTCTTACGTTCTTCTTCTTTCTTTCCCCC
TCTCCTCCTTCTTTTCTTCCTTTCCTCTCTTTCTCTTTTTCGCGTCCCTT
CCTTTTTTTTTCTCCCTTTCCCCCTCCCCTTCCTCTTTTTTCTCCCTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCNCCCNNCAGAG
ATCNNNTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGATGAAGGA
GGGTTAGGTGCAAGAGACTGATGAGCAGACGCTTTTACAGGTAACAGTTT
CTAGATGATTCACGCTGACCTCTAAAAACAACAGCTGGCCATGCTGGTGC
ACCCCTGCAATCCAGAGGCTGAGGCAGGGGCATCATGAGTTCCAGGTGAG
TTTGGGCTAATAGTGAATTCCAGGTCATCCTGAGCTGGACAGTGAGATCC
TGTCTCAAAACTAGTAACGGCCAACAGCATGCTTGGGATGTAGCTCAGTG
GCAGGTTGCTATGTATCTCAGCATTCTCCAGGCTATGGATTCAATCCCCA
GACAGACAAAAGCAACTCCTGTCTCCCACAATAAGAATTCCCTGGCTTCA
GGACAAAGAGGTAACTGGTCCCCCAGGCTTATCACCTCAAAGCTGCAGCC
TCCTTGTCCTCCGGGGCTGAGATCTTTTTTTTTCCCCTCCCAGGCACCTC
CCAGGAATGATAACTAGCAACCTGCCAAAGAATTTTCTTTTTATCCTGCT
CCACCATATAAATTCTTACCTGCAGGCTTCCCTGTTGGGCCCTTTCCCAC
CTTTCCCGACGTTTAAATCTGATAAAACTTTCCTTTCCCCCACTTAACAC
CTGCCTCGCGTTGGGCCCCCTGAAATAGTTGCTGACCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p16.b1 MSMg01no098_p16.b1 CHROMAT_FILE:
MSMg01no098_p16.b1 PHD_FILE: MSMg01no098_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:15 2005
         (249 letters)



>mm_chr17_48891658_48892306
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcctgccaaagaagaactgctgaactttctaaatgacccagaactgctgagagcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gagcctgccaaagaagaactgctgaactttctaaatgacccagaactgctgagagcaaga 390

                                                                       
Query: 61  attatgccttcccccatctcttcccaatctttgaacaaaattaagatcgtttccaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 attatgccttcccccatctcttcccaatctttgaacaaaatcaagatcgtttccaaaaat 330

                                                                       
Query: 121 actcactgaatacacgcacagaggtgaatgagcgaggcctttatacagaggtttgggggg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtcactgaatacacgcacagaggtgaatgagcgaggcctttatacagaggtttgggggg 270

                                                                       
Query: 181 ctctgtcattggagatcatctgcttcctctttcttgttggagggctccacagtaaaacag 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctctgtcattggagatcatctgtttcctctttcttgttggagggctccacagtaaaacag 210

                    
Query: 241 tgaggaggg 249
           |||||||||
Sbjct: 209 tgaggaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)