Query= MSMg01no100_a07.b1 MSMg01no100_a07.b1 CHROMAT_FILE:
MSMg01no100_a07.b1 PHD_FILE: MSMg01no100_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:45 2005
(356 letters)
>mm_chr17_46748662_46749417
Length = 756
Score = 673 bits (348), Expect = 0.0
Identities = 354/356 (99%)
Strand = Plus / Plus
Query: 1 aacctttctagggtgggaattctggtcttgggaatccaacgtgagcaagcatgggcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctttctagggtgggaattctggtcttgggaatccaacgtgagcaagcatgggcccct 260
Query: 61 ctggacttacggggaaccaaaaccaagactgcccccagaacactgggcttatcagcgtgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggacttacggggaaccaaagccaagactgcccccagaacactgggcttatcagcgtgg 320
Query: 121 ggacaacagaaagggacacacacctgacgggatggaagcagtacaggtccagctaactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacaacagaaagggacacacacctgacgggatggaagcagtacaggtccagctaactga 380
Query: 181 tgccaaagagagaccaaacatgccctcagagatggagtgagaggggggacaggcacccgg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tgccaaagagagaccaaacatgccctcagagatggagtgagagcggggacaggcacccgg 440
Query: 241 ccaccacatcaccagttacctggaccgagctgggttcatgttggctgctgtttcttgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaccacatcaccagttacctggaccgagctgggttcatgttggctgctgtttcttgatt 500
Query: 301 actagtacaggaggtggaaatgtttggaggtgataaatcacctgggctccctggca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actagtacaggaggtggaaatgtttggaggtgataaatcacctgggctccctggca 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space: 259209
Effective search space used: 259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_a07.g1 MSMg01no100_a07.g1 CHROMAT_FILE:
MSMg01no100_a07.g1 PHD_FILE: MSMg01no100_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:45 2005
(499 letters)
>mm_chr17_46783123_46784020
Length = 898
Score = 781 bits (404), Expect = 0.0
Identities = 434/444 (97%), Gaps = 4/444 (0%)
Strand = Plus / Minus
Query: 59 ttgcccaatgcacggtttcaggaattttcgagtatgaatggaaatgattattttgctttt 118
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ttgcccaatgcacggtttgaggaattttcgagtatgaatggaaatgattattttgctttt 839
Query: 119 ccactggctgtagactaagtgtttggtttagcttggattataaaatatacattcgctaaa 178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 838 ccactggctgtagactaagtgtttggtttagcttgaattataaaatatacattcgctaaa 779
Query: 179 ttctgccatgctcagcctgagaaatgcagagaagcaagatcaataatttcttttcttttc 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 778 ttctgccatgctcagcctgagaaatgcagagaagcaagatcagtaatttcttttcttttc 719
Query: 239 tttctttcttt-tttt-t-tgtgtgtgtgattcaccattgcccactacagacccactgtt 295
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tttctttctttcttttgtgtgtgtgtgtgattcaccattgcccactacagacccactgtt 659
Query: 296 cgacagtccctaatatcagcaataacccagtcgtacattaaaacagttaagagcactggt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cgacagtccctaatatcagcaataacccagtcgtacattaaaacagttaagagcactggt 599
Query: 356 tctgggaggtagaggaagcgcatacaatgagcgaggctctaggtttaatctgcagtagca 415
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 598 tctaggaggtagaggaagcgcatagaatgagcgaggctctaggtttaatctgcagtagca 539
Query: 416 gggcaagttgcgaagccagtctgtctagccccagaaggtgtaagactgctgaccaggttt 475
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gggcaagttgcgaagcccgtctgtctagccccagaaggtgtaagactgctgaccaggttt 479
Query: 476 ctcatcccccaaaatgtgcataag 499
||||||||| ||||||||||||||
Sbjct: 478 ctcatcccc-aaaatgtgcataag 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space: 434232
Effective search space used: 434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
