Query= MSMg01no100_f10.b1 MSMg01no100_f10.b1 CHROMAT_FILE:
MSMg01no100_f10.b1 PHD_FILE: MSMg01no100_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:10 2005
(437 letters)
>mm_chr17_10942076_10942911
Length = 836
Score = 830 bits (429), Expect = 0.0
Identities = 435/437 (99%), Gaps = 1/437 (0%)
Strand = Plus / Minus
Query: 1 aattagctaccaatctctgtactttcagagactcccctaagcccttttttatgaagtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aattagctaccaatctctgtactttcagagactcccctaagcccttttttatgaagtcag 577
Query: 61 aaattttgaaatagatgacttttcttttatgtgactttagtcaggattcttggaggttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaattttgaaatagatgacttttcttttatgtgactttagtcaggattcttggaggttag 517
Query: 121 ttctgtcaccttggtatacagtgtatatcacacctaataaatgggatcacactgacttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttctgtcaccttggtatacagtgtatatcacacctaataaatgggatcacactgacttac 457
Query: 181 tggacagtagggctgtatacttcatgccagccattgtcctcaatgacaggccttcagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggacagtagggctgtatacttcatgccagccattgtcctcaatgacaggccttcagaaa 397
Query: 241 cccatgtatgagacctgtgcatgcacatctatcacatctttcacaatggtgaaaaaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cccatgtatgagacctgtgcatgcacatctatcacatctttcacaatggtgaaaaaagag 337
Query: 301 tgctaaggaaatatacccataactttgggggaatccaggggccttgtaaactgagaagtt 360
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 336 tgctaaggaaatatacccataactttgggggaatccagggg-cttgtaaaatgagaagtt 278
Query: 361 agcagttgagttgatgccacatgagaccttaaggtttgacaagagaggaaaacagaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agcagttgagttgatgccacatgagaccttaaggtttgacaagagaggaaaacagaatta 218
Query: 421 cagagaagatgatgttc 437
|||||||||||||||||
Sbjct: 217 cagagaagatgatgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space: 353956
Effective search space used: 353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_f10.g1 MSMg01no100_f10.g1 CHROMAT_FILE:
MSMg01no100_f10.g1 PHD_FILE: MSMg01no100_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:10 2005
(587 letters)
>mm_chr17_10854578_10855564
Length = 987
Score = 969 bits (501), Expect = 0.0
Identities = 579/635 (91%), Gaps = 49/635 (7%)
Strand = Plus / Plus
Query: 1 atcagagtggagaaaagaaacaatgcagaaaaatgtcgtaacagaccagacacagaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagagtggagaaaagaaacaatgcagaaaaatgtcgtaacagaccagacacagaccac 260
Query: 61 agatgggcttatccacttaaattatgacaatctggaatctcaggggacggaggaaaggat 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agatgggcttatccacttaaattatgacaatctggaatctcaggggacagaggaaaggat 320
Query: 121 gggtacctaatatcttactaaataaataatccacagattaatagttgaagggacatgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtacctaatatcttactaaataaataatccacagattaatagttgaagggacatgttc 380
Query: 181 tataatgatgtttctgaataacttctatttttaaggtaaacaatgtaggaaaactttact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataatgatgtttctgaataacttctatttttaaggtaaacaatgtaggaaaactttact 440
Query: 241 acgaatacagcaatttaatttacaaaatatacacttgtattttactattatttcaatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgaatacagcaatttaatttacaaaatatacacttgtattttactattatttcaatttg 500
Query: 301 agtagttttatcaataggctcattggaaaatgtacattgataagattcaacaaagtggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtagttttatcaataggctcattggaaaatgtacattgataagattcaacaaagtggca 560
Query: 361 tttcaaaatgtaaaaaggaagataatttaaaaagacaaaggccactttggttttacggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaaaatgtaaaaaggaagataatttaaaaagacaaaggccactttggttttacggag 620
Query: 421 atatattgatcaacattccacgtgtaacttaaatatgaaggccaaatagatg-------- 472
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 atatattgatcaacattccacgtgtaacttagatatgaaggccaaatagatgggccttgt 680
Query: 473 -----------------------------------agcatcttacttttcagatgatcag 497
|||||||||||||||||||||||||
Sbjct: 681 ttcacatctatttaatcaagtgtgttaatccagagagcatcttacttttcagatgatcag 740
Query: 498 -tgaaaaatgccagtgtaactggttgtagacttcaggtgcatcatgtactcgtcctatct 556
| | ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct: 741 ct-agaaatgtcagtgtaactggttgcagacttcaggtacatcatgtactcgtcctacct 799
Query: 557 gacaggtgacactgct----ccccccccccgcctc 587
|||||||||||||||| |||||||||||||||
Sbjct: 800 gacaggtgacactgcttcccccccccccccgcctc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
