BAC Information

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BAC

Clone NameMSMg01-100J23
Chromosome17 (Build37)
Map Location 61,198,763 - 61,333,664
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100J23.T7 (MSMg01no100_j23.b1)MSMg01-100J23.TJ (MSMg01no100_j23.g1)
ACCAG316271AG316272
length650711
length of high quality
(start - end)
325 (65 - 389)477 (57 - 533)
definitionCHROMAT_FILE: MSMg01no100_j23.b1 PHD_FILE: MSMg01no100_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005CHROMAT_FILE: MSMg01no100_j23.g1 PHD_FILE: MSMg01no100_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,198,763 - 61,199,087)(61,333,189 - 61,333,664)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCTC
TTCACCATGAATAGTCATACTTGAATTATATAAAAATGCAATTTAAAATA
TTTACAAGCTTAATATATATTAGAAAAGAGGAGAGAATAAAAATAATCCA
AGGAGAATGTGGTAGAATGAAAGACATAAGGACAAATGATAAGAATGAAA
TGCAAAAATTAAATATTAGAGTTATTAAATGAATAATACCAAAAATTAAA
TATTAGAGTTATTAAATGAATAATGCAGTTTTATTTTTATGTTTATTCTG
TAATATGTGTACATTATGTCATGTGTTTTGATCGTATGAATTCCCAATAT
CTTCTCATGCGCCTTGCACTCCTGCTGAACCTCCTGTCCATCTTAGCAAG
TGCCTCTACCATGCATGTGCCTACTTAATCCAAAAAAAACCTCCCTTCCT
TCCTTTTTCTTCTTTTTTCTCTTCCCTTCTTTTTTTTCCCCCCACACAGT
CCTCCCTCTTTTTGCCTCCCCTCTCCCCCGTCTTTCCTCCTTTGCCTTTA
TCTTATAACTTAAATTTCTCCCCTTTTTTTCTTATTTTTACCCCCTTTTT
TTTTCTCCGTAATCTACTCACAATTTTCCCTCTTATCTCCTCCCTTTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTAAATTAATTTAAATTTGATCAAATAAACTACATCAATGGCTTT
TTTTTCACCTTTCTACCATGAAACCTTGCAGTCATTTTAAGATCTATAAA
TAATGTATGTGATATTTGCATTTTCAAATAAAGTTTAATTTTCATATTTT
GAGATTTTAGAAAATTTGACACTTGTATTATCAAGGTGAGTAATTATTGT
ACCTTGTTCCACAATTCAACTTGAAAGAAATACATCAGTTTTACATATAT
AGTTTCAGACAATTAATGCTTGTATGAGTCGAACTTTTTCTTTACTTAAT
AAACAATTTCTTCCTGCAATGCATAGTAAGTTGAAGGGAAGTTTTTCTTC
AGTTATAAATCAATAATTTAATCTTGAAGAAAAATCTCATATTTCATGTG
GAATGTTATGCTATATGGTAATACTTTTATTTTAGACATTTATTGATGTT
TATGTGTATGAGTGTTTGCATGAATGCATGTTGGCATAGCATATGTAAAT
TTGGTATCTGCTGAACCCAGAGGAGGTCATCAGATTCTACATCATTGGAG
GAGCATATTGTAGTATGTCACCATATGGATGCTGGGAAATAAGTCCAGCT
TCTCTGTCATAAAAAAAACATTTTTTTTACCGCTAACCCCCCTTTAAATA
TTAGCCCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_j23.b1 MSMg01no100_j23.b1 CHROMAT_FILE:
MSMg01no100_j23.b1 PHD_FILE: MSMg01no100_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:33 2005
         (325 letters)



>mm_chr17_61198563_61199287
          Length = 725

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatacttgaattatataaaaatgcaatttaaaatatttacaagcttaatatatattaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatacttgaattatataaaaatgcaatttaaaatatttacaagcttaatatatattaga 260

                                                                       
Query: 61  aaagaggagagaataaaaataatccaaggagaatgtggtagaatgaaagacataaggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaggagagaataaaaataatccaaggagaatgtggtagaatgaaagacataaggaca 320

                                                                       
Query: 121 aatgataagaatgaaatgcaaaaattaaatattagagttattaaatgaataataccaaaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgataagaatgaaatgcagaaattaaatattagagttattaaatgaataataccaaaa 380

                                                                       
Query: 181 attaaatattagagttattaaatgaataatgcagttttatttttatgtttattctgtaat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 attaaatattagagttattaaatgaataatacagttttatttttatgtttattctgtaat 440

                                                                       
Query: 241 atgtgtacattatgtcatgtgttttgatcgtatgaattcccaatatcttctcatgcgcct 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 atgtgtacattatgtcatgtgttttgatcgtatgagttcccaatatcttctcatgcgcct 500

                                    
Query: 301 tgcactcctgctgaacctcctgtcc 325
           |||||||||||||||||||||||||
Sbjct: 501 tgcactcctgctgaacctcctgtcc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_j23.g1 MSMg01no100_j23.g1 CHROMAT_FILE:
MSMg01no100_j23.g1 PHD_FILE: MSMg01no100_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:33 2005
         (477 letters)



>mm_chr17_61332988_61333864
          Length = 877

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaattaatttaaatttgatcaaataaactacatcaatggcttttttttcacctttctacc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaattaatttaaatttgatcaaataaactacatcaatggcttttttttcacctttctacc 618

                                                                       
Query: 62  atgaaaccttgcagtcattttaagatctataaataatgtatgtgatatttgcattttcaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgaaaccttgcagtcattttaagatctataaataatgtatgtgatatttgcattttcaa 558

                                                                       
Query: 122 ataaagtttaattttcatattttgagattttagaaaatttgacacttgtattatcaaggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ataaagtttaattttcatattttgagattttagaaaatttgacacttgtattatcaaggt 498

                                                                       
Query: 182 gagtaattattgtaccttgttccacaattcaacttgaaagaaatacatcagttttacata 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagtaattattgtaccttgttccacaattcaacttgaaagaaatacatcagttttacata 438

                                                                       
Query: 242 tatagtttcagacaattaatgcttgtatgagtcgaactttttctttacttaataaacaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatagtttcagacaattaatgcttgtatgagtcgaactttttctttacttaataaacaat 378

                                                                       
Query: 302 ttcttcctgcaatgcatagtaagttgaagggaagtttttcttcagttataaatcaataat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttcttcctgcaatgcatagtaagttgaagggaagtttttcttcagttataaatcaataat 318

                                                                       
Query: 362 ttaatcttgaagaaaaatctcatatttcatgtggaatgttatgctatatggtaatacttt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 317 ttaatcttgaagaaaaatctcatatttcatgtggaatgttatgctatatgggaatacttt 258

                                                                   
Query: 422 tattttagacatttattgatgtttatgtgtatgagtgtttgcatgaatgcatgttg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tattttagacatttattgatgtttatgtgtatgagtgtttgcatgaatgcatgttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)