CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGCCATTGCGTCTGAAGCGATAGCCTCTACTCCTAAAGCATTAGCA
TTGAATCTCAGACTGGAGACTGGGCAGCTGCACTTCCGCTCGGGCTACTG
CTGAGCTCCTAAAATTGGATTTGGTGTTAGGAAAGTTGTCAGTGACCTCT
ACCTTTTATGCTGCATGCCTGCTTGTGGGGAGCAGTCAGGATGTCCTTGA
TGTCCCTTTGAGGACTTAAATGACATTGGTCTTAGGTGACCCTTTGCTTC
TTCTTGAGGACCTGGTCCATACCCCTTCTCTTTTTATTGCCCTAGTAGTT
TTTAGTCAGTACTGACCAAAGCCCAAGTGACTTTCAGTGTGACCACAACA
TCTCTTCTTTTTATTTTTTAATGTGCATTAGTGTTTTGCTTGCATGTATG
TCTGGGTGAGGGTGTTGGATCCCTGGAACTGGAGTTAACAGGCATTGTGA
GCTGTCATGTGGATGCTGCAAATTAGAACCCCTGGTCCTCTGGAAGAGCA
GCCAGAGGCCTCTCTCCAAGCCGTCATCGTTTCTTCAATATACTAGTGGC
TTATGTATCAGAAAGTTAANAATTCACTGTTCAGGAACTTGATTGTCCTG
CTGTCGTGTGAAATTGGCAGGTTTAAGCTTTCCCTTTGTCCCGAGGGCCG
TGTCATATTAGAAGGAAAGTGTCAGG

NCCGAGAGANNNTNNNNTNTNTTNTTTTTNNNNNNNNNNNTTNTTNTNNT
NTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTNNTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNCCCTTNNNNNNCCC
AATGAAGTGGGTAGCCTGGNGGNCGCCTGGTTCTACAAAGTTAGGTGGAC
CTATAAAAAGGACCCGCGAAAATCTGGACGGGGGACAAAAAAAGGGAAGG
GGTCGGGTCTTTGGTTATACCAANCCTGGAACTCCCCCAAAAAAAAGGGA
AATTTTGCCCCCTAAAAAAGGGGCCCCTCCTCCCCCCGGGAGGCCCCCTC
CCCGAGGGGGGGGGGGGGGGAGAAAAAATGGGGGAAGAAAAAAANAAAAA
AAAAACCCGGGCGCACAAGGTTTTCTTAACAACCCCCCCCCTGGGGGGGG
GGGCGCCCCCCCCCTCCTTAAAAAAAAAACAAAATATTTATTTTTTTTCG
GGAGGGGTGGTTTTGGCGCCGCCCCCCCCCCCCCCTCCCCTCCCCCAAAA
CAAAAAAAAAAAAAAANNNCTAANNNNNNNNNNNNNNNNNANNNNNNNNN
NNCNNNNNNNNNNNNNNNNNNAANNNNNNTNNNNTNNNNNNNNNACNNAC
AAAGAAAAGAGGAAAGAGAAAACTCTANNNNNNNNNNNNNNNNNNNCNNN
NNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNCNNNNCN
NCNNNCNCCCNCCNCCNCCCCCCCCNCCCCTTCNNCCCCCCNNCCNCACC
CAACCCAAAAAGGAGAAAAGGAAAGAAAAAAG

Query= MSMg01no101_e19.b1 MSMg01no101_e19.b1 CHROMAT_FILE:
MSMg01no101_e19.b1 PHD_FILE: MSMg01no101_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:27 2005
         (668 letters)



>mm_chr17_48554628_48555695
          Length = 1068

 Score = 1193 bits (617), Expect = 0.0
 Identities = 652/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgccattgcgtctgaagcgatagcctctactcctaaagcattagcattgaatc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgccattgtgtctgaagcgatagcctctactcctaaagcattagcattgaatc 264

                                                                       
Query: 65  tcagactggagactgggcagctgcacttccgctcgggctactgctgagctcctaaaattg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagactgcagactgggcagctgcacttccgctcgggctactgctgagctcctaaaattg 324

                                                                       
Query: 125 gatttggtgttaggaaagttgtcagtgacctctaccttttatgctgcatgcctgcttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gatttggtgttaggaaagttgtcagtgacctctaccttttatgcttcatgcctgcttgtg 384

                                                                       
Query: 185 gggagcagtcaggatgtccttgatgtccctttgaggacttaaatgacattggtcttaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggagcagtcaggatgtccttgatgtccctttgaggacttaaatgacattggtcttaggt 444

                                                                       
Query: 245 gaccctttgcttcttcttgaggacctggtccataccccttctctttttattgccctagta 304
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gaccctttacttcttcttgaggacctggtccataccctttctctttttattgccctagta 504

                                                                       
Query: 305 gtttttagtcagtactgaccaaagcccaagtgactttcagtgtgaccacaacatctcttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttttagtcagtactgaccaaagcccaagtgactttcagtgtgaccacaacatctcttc 564

                                                                       
Query: 365 tttttattttttaatgtgcattagtgttttgcttgcatgtatgtctgggtgagggtgttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttattttttaatgtgcattagtgttttgcttgcatgtatgtctgggtgagggtgttg 624

                                                                       
Query: 425 gatccctggaactggagttaacaggcattgtgagctgtcatgtggatgctgcaaattaga 484
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 625 gatccctggaactggagttaacaggcgttgtgagctgtcatgtggatgctgtaaattaga 684

                                                                       
Query: 485 acccctggtcctctggaagagcagccagaggcctctctccaagccgtcatcgtttcttca 544
           ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 acccctggtcctctggaagtgcagccagaggcctctctccaggccgtcatcgtttcttca 744

                                                                       
Query: 545 atatactagtggcttatgtatcagaaagttaanaattcactgttcaggaacttgattgtc 604
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 745 atatactagtggcttatgtatcagaaagttaaaaagtcactgttcaggaacttgattgtc 804

                                                                       
Query: 605 ctgctgtcgtgtgaaattggcaggtttaagctttccctttgtcccgagggccgtgtcata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 ctgctgtcgtgtgaaattggcaggtttaagctttccctttgtcccgagggctgtgtcata 864

               
Query: 665 ttag 668
           ||||
Sbjct: 865 ttag 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)