BAC Information

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BAC

Clone NameMSMg01-102D24
Chromosome17 (Build37)
Map Location 74,392,480 - 74,392,768
singlet/doubletsinglet
Overlap geneSrd5a2
Upstream geneLycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh
Downstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D24.T7 (MSMg01no102_d24.b1)MSMg01-102D24.TJ (MSMg01no102_d24.g1)
ACCAG317448AG317449
length783713
length of high quality
(start - end)
249 (126 - 374)289 (79 - 367)
definitionCHROMAT_FILE: MSMg01no102_d24.b1 PHD_FILE: MSMg01no102_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005CHROMAT_FILE: MSMg01no102_d24.g1 PHD_FILE: MSMg01no102_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCGCCGNGCTNCCGATAATTT
NNGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCG
CGGAATTCTGTAAGGTTCCATTAGAAAGCTAAACAGAAAAATGAGAACAA
TAATGCACACATGTGACCTTGGTGCTTAGGAAGCAGAGGCAGGGGAATCA
CTATAAGTCAGAAGCCAAGCATGAGGTCATAGGTACAATAGCCCAGTTAA
GAAGACATAAAAACCCTCTACCTGGAAGTTGTCGGTGATGGTGCATGTTT
TAATCTCGGCACTCAGAGGCAAAGCCAGACAGATCTCTGTGAGTTTAAGG
ACAGCCTGGTCTATATAGTGAGTACTTGTACAACCAGAGCTACTCAGAGA
GATCCTGTCTCTTTTTTCCACCCCCCCCCCCCAAACTTAAAGTGTCTTAA
TGTGTATGTAGATAACGATGAGGCTTCAAAAGAAAAATATTGCGAGATAA
GTTTTCAAATGTATTATACTGAACAAAATGACCCACAGAAGTGTATGGAC
AATTACTTCTTATGCATATTTGCCCCCTGTTCATTCTATTAATATGAATC
CTTGTAGATTGATCTGCCATGGTCGTGGATTGTGACTTGACATCGTTCTG
TTTGTTAAAACAAATTAACATGTTTTTTATACCTCTTTTAATTATATTTT
CTCCATTATACCTGAGAACAGAACAGGCCATATCTAACTAACACCATCTA
TTTCTCTCTGTACAATATTTTGTTTTTAATTTA
ACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGAAATATCCAGAGATTCGAGACGGTTTCCCCA
GTCAGCTAAGTAATAAAATCTTTAACCAAGTCCTTGTTGCTTTTTCCACT
GATTCCCCGGCAGTGCAAATGTCTCTTTGACGAGAGACTCAGGCTAAGCA
TTATTTCTTCCAAGAAGCTGCCACTGAACCACTATTTGCCTGTGACCCTA
TTCTGACTCTTCCCAAAGGCCCTTTGCACATGGATTAAAATCTATCCTAA
GAAGACTTAGTCCTCATCTCTCCAACTCTCATAACCCCCGCCTCTGCTTC
CTAACATCTACCTTTTATTGCACCCCCGCACCCCGCGTTGAGCTGCCGAG
CAGCAAAGTGAGGTTTTGACCCGAGTCTTCCTGATTATGTCAGTGGGTCA
CTTGTCATCTGTGACGTGCAGAGGGTCTCGGTGTTCATAAGCAGGTCAGC
CTATGGAGACTTTTCACCGGCTGAGAATCATTGAAGATGAATGCCTAATT
GATGATAATAGACAAATCCCCGTTCTTCCAGATTAAGGAGATGCTTATGA
CATAATCATGTTCATGGGTAGACGCTGAGTAGATCTTATCACCGTAACAT
CTTCTAGTCAATCTCCCTTGACACGTTATTTACAATGAAAATCCACCCAA
CTTCTTCTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d24.g1 MSMg01no102_d24.g1 CHROMAT_FILE:
MSMg01no102_d24.g1 PHD_FILE: MSMg01no102_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:47 2005
         (289 letters)



>mm_chr17_74392280_74392968
          Length = 689

 Score =  489 bits (253), Expect = e-143
 Identities = 280/289 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagattcgagacggtttccccagtcagctaagtaataaaatctttaaccaagtccttgtt 60
           ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 489 gagattcgagatggtttccccagtcagctaagtaataaaatctttaataaagtccttgtt 430

                                                                       
Query: 61  gctttttccactgattccccggcagtgcaaatgtctctttgacgagagactcaggctaag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 429 gctttttccactgattccccggcagtgcaaatgtctctttgatgagagactcaggctaag 370

                                                                       
Query: 121 cattatttcttccaagaagctgccactgaaccactatttgcctgtgaccctattctgact 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 369 cattatttcttccaagaagctgcaactgaaccactatttgcctgtgaccctattctgact 310

                                                                       
Query: 181 cttcccaaaggccctttgcacatggattaaaatctatcctaagaagacttagtcctcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cttcccaaaggccctttgcacatggattaaaatctatcctaagaagacttagtcctcatc 250

                                                            
Query: 241 tctccaactctcataacccccgcctctgcttcctaacatctacctttta 289
           | ||||||||||| |||||| |||||||||||||||||||||| |||||
Sbjct: 249 tttccaactctcagaacccctgcctctgcttcctaacatctacgtttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)