BAC Information

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BAC

Clone NameMSMg01-102J23
Chromosome17 (Build37)
Map Location 81,184,341 - 81,184,673
singlet/doubletsinglet
Overlap genenone
Upstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
Downstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J23.T7 (MSMg01no102_j23.b1)MSMg01-102J23.TJ (MSMg01no102_j23.g1)
ACCAG317716AG317717
length701779
length of high quality
(start - end)
332 (74 - 405)---
definitionCHROMAT_FILE: MSMg01no102_j23.b1 PHD_FILE: MSMg01no102_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:16 2005CHROMAT_FILE: MSMg01no102_j23.g1 PHD_FILE: MSMg01no102_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCGGCGGAAT
TCTTCCTAGTCTTCCACCAGAGGATGCAATGAAAAAAAAATCCATCATGT
TAATAATTAGCCTAGAGTCACACAAGTTGACACTGCCTTTCTCTGTCCCA
AGAGCTGACCAGCTGCCAGTGTAAATACTGTTTAGGAAGGAATGTACCAA
GCAGCAATACTGTCCCTTGGAAAGAGGGTAAGTATTCAAGTCTGATGTTT
TAATGTTTCAAAAAGTGAAAAAAATATTCTTTAATCCCATGTACAGAGGA
TGTTTGGTTCCCCTTCCAGGTCTCAGAAACTTTGCTCTGCAATATAAATA
CAGATTTTTTTCTCCTGTCTTCCTTCTGCCCAAGCATGTATGACCACGCT
ATCATAGTAGAAGAGTGGAAAGAGAAGCTATTGTTGAAGCAGGCAAACAG
CAATAACAGAACATTGCAGTGCTAGACACTTGGGTGAGTGTTCACTCAGA
GCTTATCTTAGTCGTTCATGCTATTATAACAACCTGCTATACATGGTAAG
CTTAGAAACACCATGACCTGGTTCACACCCTTGTGGCATCCTTAAGTCCC
TTGATCATGCACACGCAGGCTCAGGTTCTGGAGTCCGCCTTCTTCAGCTT
ACACCTCCACCCCTTACCCCCCTATTCTTGCCGCGCCATATAAAATGATC
A
TGTTGGTGGTGGGNNTGGGNNNGGGGGGGTTCCTCCTTNNCCCCCATAAA
TACAAAAACGATGATAGTGATAGGCCTGGNGGACGCCTGGTTTCCGAGCC
GANGNGAANNAGAGAAGGTTCCCAGGACGGGGGGNGGNACGGNAACNAGA
GGCNCAAAAAAAACAAAACCAAAACTAACCCCAAGAAACACGGAGACAAG
CANGNGCCCCCGCCGCAAGAAGAACCCACCGCCGCAACCCCCCAAAAACA
GGAAAAGAACACGGCAGCGGACCCCAGACACGCCAGAAGAGGGAGCCAGA
ACAGGAAACAGATGGATGGGAGCCACCACGAGGCCGCCGGCGACGGAACC
CCAGACCCTGGGAAGAGCAGACGGGTGTTTTTTTTCTCGGAGCCAGCCCA
CCAGCCCAAGACTTGATTTTTTTATGTCCCCGCTCTATCCACAAAATTAT
GTAAGGACAAATGAAATGTTTGACCCAAATGAAAAATAAAGCAACGTTTC
ATTTGAGAGGGTAATCGCAGTATCAGGCCAACTATGAAGGCTCAAATAAG
AATATGGTAAGTTATCCAGTTAAAGCAAATTGTTTTTGTTATTCTGGTAG
AACATGCTCCTGCGATTGAGCGAAAAAAAGCAATTAAGCCATGATCTGGT
TATTGGGAGGAACATAGACATGCCCAGGCCGATTGGAAAGGAAGGAACTT
GTTATACCCAGGGCGGAGTTTTTTTTATTTAGGGGGGGTAAAACTAGAAG
TTCCGGCATAGACCGGGGTGTGGGTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j23.b1 MSMg01no102_j23.b1 CHROMAT_FILE:
MSMg01no102_j23.b1 PHD_FILE: MSMg01no102_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:16 2005
         (332 letters)



>mm_chr17_81184141_81184873
          Length = 733

 Score =  584 bits (302), Expect = e-171
 Identities = 326/334 (97%), Gaps = 3/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaatgaaaaa-aaaatccatcatgttaataattagcctagagtcacacaagttgaca 59
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 atgcgatgaaaaacaaaatccatcatgttaataattagcctagagtcacacaagttgaca 474

                                                                       
Query: 60  ctgcctttctctgtcccaagagctgaccagctgccagtgtaaatactgtttaggaaggaa 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 ctgcctttctctgtcccaagagctgaccagctgccaatgtaaatactgtttaggaaggaa 414

                                                                       
Query: 120 tgtaccaagcagcaatactgtcccttggaaagagggtaagtattcaagtctgatgtttta 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtaccacgcagcaatactgtcccttggaaagagggtaagtattcaagtctgatgtttta 354

                                                                       
Query: 180 atgtttcaaaaagtgaaaaaaatattctttaatcccatgtacagaggatgtttggttccc 239
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 353 atgtttcaaaaagtgaaaaaaatattctttaatcccgtgtacagaggatgtttggttccc 294

                                                                       
Query: 240 cttccaggtctcagaaactttgctctgcaatataaatacagattttttt-ctcctgtctt 298
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 293 cttccaggtctcagaaactttgctctgcagtataaatacagattttttttctcctgtctt 234

                                             
Query: 299 ccttctgcccaagcatgtatgaccacgctatcat 332
           ||||||||||||| ||||||||||||||||||||
Sbjct: 233 ccttctgcccaag-atgtatgaccacgctatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 733
Length adjustment: 9
Effective length of query: 323
Effective length of database: 724
Effective search space:   233852
Effective search space used:   233852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)