BAC Information

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BAC

Clone NameMSMg01-102L18
Chromosome17 (Build37)
Map Location 67,060,911 - 67,061,156
singlet/doubletsinglet
Overlap genePtprm
Upstream geneRab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102L18.T7 (MSMg01no102_l18.b1)MSMg01-102L18.TJ (MSMg01no102_l18.g1)
ACCAG317798AG317799
length1,807749
length of high quality
(start - end)
---246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no102_l18.b1 PHD_FILE: MSMg01no102_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:25 2005CHROMAT_FILE: MSMg01no102_l18.g1 PHD_FILE: MSMg01no102_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGGGGNNNGGGGGNNTNNGNNNNNNTNNNNNNNNNNNGTNNNG
NTNNNNNGTTGTNTNTGGTNNGGNNGGGNNNNNGGTGGGNGGNNGTGGGT
TTNNNNGGGGGGGTTTTGNTTNTNTNNNNGACTAGCGTGACATNTGCGTG
CNGCGCGGAGTGATCGCACGCCCGCATAGCTCATGATAGCTGAGCACCAN
CTGAGGCACTNGGCAGTGTGTNGTGGTCCGAGCGTGGTGCTGTGGNGACG
CAGNTATTNGCNTTGAGACAGGATATGNTGAGTTACACNATCTCCGCGAA
CATACTGTATGTTGAGTGACCTNCAGACATCAGGTGTAGTGGTGCGGTAG
TNCACACGCGTTAGCTCTTCANATCCAACCCTCTCCTTACACNCACTNTG
ATATACACACAGCTCGCGCAGCACAAAGCTAATACTTGCACCCCCGTTCC
TGTGGANGAGCAAGCTGCGAGTGCATGACCACTGATGTTATTGCCGGACA
CACACCACGACCTGTGTCGCATGACGACGAGCCCNATACGATCACCGCAC
ACACGAACGAGACACAATGCCGAACACGACATAGACTAAGAACGTGAGCA
GAACAAGACACGGACGATGATATAAGGTGATGAGATGATANATATTGATC
AGGGTACATCAGAAGGTCTGCAGATAAATAAGAAACAATAGGAATAATGT
TGTGGTAAAACGTATGTGTGGAGAATGTGTGATATAGTATTGAAGAGATA
GACGACGTAGGCGATAATNCTAATTGATATGACAGATACACAATGCAGCC
GAGAGATCTGTATCTGGATGAATATAATATGTTCAGTATANTATTAATAT
ACATATATACTAAGAANAGGCGTACAGATGCGTGGGAGACTCATGATCTG
ATGCTGACANGAAATGAATGTGTGTGTTATGCTATGTGAGTAATCATCTG
TGTGTTGTGTGGTGTTGTATGTATGACGTGTCGCATATAGTAGTGAAAGA
TGATGTATGATGTACTAGTAGGATGNGATGGAGAAAAAAAAGAGCTCTCA
GTGTGTTGAGTGTGCGGCATACAGGTGCAGTGAGCTAGATAGCAGTCACT
ATGATATATGATATCAATTATATGTTGACAGATAAAGTTACTAATCATAT
GTTGTAGTATGTGAGCGCAGTATAGTAACTGCATGTGTTCGTACNCATAG
ATGATTGCAGCAAANTACTNATTGAGATGTGTAGATAGCTGAGTGCCGTC
GTGTGTAAGAGTGNTCGCGAAAAAGTGATAGTGTAGTATCGACTGTGGAT
GACATCTAGGCGAGTGNTAGTGAAATGAGTATGCGCGATATCTGGNAGTG
ATGCAGTGTAGATCATATTATAGAACGACACGACAGCGTGATGTGCTGAT
CTGCGACTATGATGATGCATGTACGAGAATCTTGCCATATGAATATGATC
TCTCAGTGATAGACATGCGTATGACATACACGATGTATACTGTATAAGAG
TAGTGAGCGTTATGTAATGATAATGACGTGTAGTTACCTAGTGATAGATG
ATGNGNCAGCGATGTAAGGTGATAGGCAGACTGCTGAGTGATGTATGCGT
CATCTATATATATATCGTACGTCTCTCTCTNATGAANATGTATGCGTATG
ATGATAGATACGTAGCGATGTAGATGAGTGATATGTANATCAAATGATTA
TGTGACTAATTGNTGCATGCGTAGACTGAGAGCGCACTANTCTATGTGNT
ACGTACGTATCATTAGNTGCGGGTATCACTGCTACGTAGTGTAATCTTAT
CNATTGG
TGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACCTGCCTCTGCCACCCAGTCTTGT
TTAGGTTTTCTCTCTCTTCATCCTCTCCCCAGGTCAAGGGAAGGCACGCC
CCTGCAGCTCTTTCTAAAACTGCCCTTTGCCCATTCCCCCTAGCCTCTCA
GCCATGCTTGTGTTCCTTTTGTTACTGTGTAAAGGGATCTTCCTGGAGAC
TACTGCCCTGAGACTGTTGGCTGTGTTTGGCTACATTCATATAAGTGCAG
CCACACCCACCACTGCTCTGTTTTTTCAGAGAAAATCATGCCTTCCCATG
CAAGCTTGATTATTTCCTACCCCCCCCCCCCCCACTTTGTCCCGTCATCC
CCTCAGCACATTGTATATGTACTCAAAAGAATCCAATCCTTCCTCTTGTT
GGATTGCTCTTTCTCATCTGCTGTTATAGTCCTATATCCATGCCCTGCTC
CTCCCTCTATAGCTAATAGTTTGACCGCTTTCGCCTCACTCTCCATATCT
CCCTTGTTTTCCCTGTGCCCGATTCCATTGGCTCACGTTTCCTGTGTTCT
TCACTCTTCAATGAACGTTTTCTCTATTCTTATTCGTAAACTTTAACAGC
TCACTTTGTCCCACCCTGCCATTTTCCCCTCATAGCTTCCTATACCTTAC
AGCCCTTTTGCTTTCACCCTTTGTTTACGTCCTCCCTTACTCCTTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_l18.g1 MSMg01no102_l18.g1 CHROMAT_FILE:
MSMg01no102_l18.g1 PHD_FILE: MSMg01no102_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:25 2005
         (246 letters)



>mm_chr17_67060711_67061356
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctgcctctgccacccagtcttgtttaggttttctctctcttcatcctctccccaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctgcctctgccacccagtcttgtttaggttttctctctcttcatcctctccccaggt 260

                                                                       
Query: 61  caagggaaggcacgcccctgcagctctttctaaaactgccctttgcccattccccctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagggaaggcacgcccctgcagctctttctaaaactgccctttgcccattccccctagc 320

                                                                       
Query: 121 ctctcagccatgcttgtgttccttttgttactgtgtaaagggatcttcctggagactact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcagccatgcttgtgttccttttgttactgtgtaaagggatcttcctggagactact 380

                                                                       
Query: 181 gccctgagactgttggctgtgtttggctacattcatataagtgcagccacacccaccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctgagactgttggctgtgtttggctacattcatataagtgcagccacacccaccact 440

                 
Query: 241 gctctg 246
           ||||||
Sbjct: 441 gctctg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)