Query= MSMg01no103_b05.b1 MSMg01no103_b05.b1 CHROMAT_FILE:
MSMg01no103_b05.b1 PHD_FILE: MSMg01no103_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:52 2005
(612 letters)
>mm_chr17_15814532_15815542
Length = 1011
Score = 1112 bits (575), Expect = 0.0
Identities = 602/615 (97%), Gaps = 8/615 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtcttttccaaagctcgaggcttaaaaaaaaaaaaaaaaaaaaa-------ct 57
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 198 gaattctgtcttttgaaaagctcgaggcttaaaaaaaaaaaaaaaaaaaaaaaaaaacct 257
Query: 58 cacagcttagtatactacgaatagtatatttaaaacaaagagtaaatatgtcaaaaatac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacagcttagtatactacgaatagtatatttaaaacaaagagtaaatatgtcaaaaatac 317
Query: 118 ctttctaataatgaaagttttcttgtgtgtgaaacttcagtttcagctataacttgctta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctttctaataatgaaagttttcttgtgtgtgaaacttcagtttcagctataacttgctta 377
Query: 178 gtgtagagtgattattaagaattcgtgtgaactgggtgttggtgtgaaagttcaacccta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtgtagagtgattattaagaattcgtgtgaactgggtgttggtgtgaaagttcaacccta 437
Query: 238 gcttttgatatgttaaatgcaagcagaaagacatgggtgaaaccttttcactcctcaggt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcttttgatatgttaaatgcaagcagaaagacatgggtgaaaccttttcactcctcaggt 497
Query: 298 ttgcaagacaattatctttctacaggggtcaagaaagtcagcttggagtctcaaagataa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgcaagacaattatctttctacaggggtcaagaaagtcagcttggagtctcaaagataa 557
Query: 358 tcactgtccttttcggggtagcttcttttgtgcaagtaatcctctgctggcttttgtgta 417
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 558 tcactgtccttttcggggtagcttcttttgtgca-gtaatcctctgctggcttttgtgtg 616
Query: 418 ataaaacctcaagcctcgggcaggaaggctgcaaagaggaattaaagctgtcagtataaa 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataaaacctcaagcctggggcaggaaggctgcaaagaggaattaaagctgtcagtataaa 676
Query: 478 ttgtgaaatatcctattagccataccaagtttgagtcgcagcttccatacagattttcag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttgtgaaatatcctattagccataccaagtttgagtcgcagcttccatacagattttcag 736
Query: 538 ttgtttaagcgaagaagacagcttttcttactggcctcagtcactgctgaggagggggaa 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttgtttaagcaaagaagacagcttttcttactggcctcagtcactgctgaggagggggaa 796
Query: 598 gctgcaatgacaagc 612
|||||||||||||||
Sbjct: 797 gctgcaatgacaagc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space: 602602
Effective search space used: 602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_b05.g1 MSMg01no103_b05.g1 CHROMAT_FILE:
MSMg01no103_b05.g1 PHD_FILE: MSMg01no103_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:52 2005
(149 letters)
>mm_chr17_15963798_15964346
Length = 549
Score = 273 bits (141), Expect = 4e-78
Identities = 147/149 (98%)
Strand = Plus / Minus
Query: 1 ccgctgggagctcgcaggtaccttctcagtccacccatctgctacggacctcggtgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccgctgggagctcgcaggtaccttctcagtccacccatctgctacggacctcggtgtcat 290
Query: 61 ctgagtatctaacgcggctcggatagactcttgttctgccaagagaccccaacaaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctgagtatctaacgcggctcggatagactcttgttctgccaagagaccccaacaaatttg 230
Query: 121 ctaccaagtccaacagttgcgattggctg 149
|||| | ||||||||||||||||||||||
Sbjct: 229 ctacgacgtccaacagttgcgattggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space: 76281
Effective search space used: 76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
