BAC Information

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BAC

Clone NameMSMg01-105A17
Chromosome17 (Build37)
Map Location 71,475,774 - 71,476,354
singlet/doubletsinglet
Overlap geneMyom1
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A17.T7 (MSMg01no105_a17.b1)MSMg01-105A17.TJ (MSMg01no105_a17.g1)
ACCAG319502AG319503
length687683
length of high quality
(start - end)
583 (44 - 626)416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no105_a17.b1 PHD_FILE: MSMg01no105_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:32 2005CHROMAT_FILE: MSMg01no105_a17.g1 PHD_FILE: MSMg01no105_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCCGCGGAAT
TCTGAGCCGTGCCTGACCACAGATGGCTTATCTGACCATGTCCAGAAGGA
ACTGCTTTTGCCCTAAGGGTGTAAACCAAAAGATGAGCTACAGAAATGAT
TAGGAGGAGGTGGAAAGGCCCCAACATGGTGAGGATCAGAGAGACACAAG
GGGAAAGAGGAAAGGCAGGAGACTTTATTCACACTGGGGGAGGCCAGTTC
ACAAGGCTGCTATCAGAAATGCACCACCTCTACTAACAGGGACCCACCAT
ACTCAAGCCTACAGGCACATGCCTCTATTTTGATAGAACATGAGGTATGG
ACACAATTCCTAAGAGCTTACAGGTAAAGCGTCACCGGCTTCCATGCTGG
CCTCACTTCTGCTCTCACTCAGCACTTCTCCAACATCCTCTGCCCTTCTT
CCTTGAAATCATTTCCTAATGTTTTCTTACTACATAAATTGTAGATTAAA
ACCCTTAATGTGTTCTTCAATGGTGCCTCCTCATCTATAGGAATAAGAGA
TCTGATGACTTCCTCCTAAGCCAGCACAAAATGGAGCCATCAGGAGGATT
TCATCGTCTGTAGCCCAATCCTTTTCACGACAGCAGTATGATGGTTGGCC
AGCTGGTCCTGCCTCTCCTCAAAACTCCCCCAGTCTC
ATGCAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGATGAATTAAAGTTGGCAACCAGGAATA
GCTACCACAAGTCCACCCGCTGTCAACTTGATCCATAATCATAGCTTTTT
ATGTCATACTAATTTCCAAATGAAAATAATTAGGTATAATTATAGATAAC
ATAACTATCCCACATATAGTTTCAAATGCATTATATATTTATCCATGTCA
ATATTATGTCTAACATGGTATAACTATCCATCAAACAACTGAAACGCATT
ATAAATTTCAGAATAGGTGACAGTGTACCTTGAGGGACATTCTTTTGGTA
TCTCAAACCTAAATATGATAACCACTAATTTTCTCTTAATTGATGTACTT
AAACATTTATCATTACATGTTAAGCAACTTGAGGAAATATATCTGTACAA
ACACTTTCTTAACAAATATGACAGAAACAATCCTGTCAATTATAATCTTT
GTTTCTGCAACTGATCACATAGCCTTAGCTGGCATATATAACTACCTTCC
TCCATCATCCATTCTGTGTTTCCTCCACCCCCAGCAAGCACCTCAACAGA
TTTCAAAACAGTCCTAAACAGAAAACTCATTGATTATTTTGAATATCAAA
AAAAAAGTGTTGGACAGATTCTTCAGCCACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a17.b1 MSMg01no105_a17.b1 CHROMAT_FILE:
MSMg01no105_a17.b1 PHD_FILE: MSMg01no105_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:32 2005
         (583 letters)



>mm_chr17_71475572_71476554
          Length = 983

 Score = 1100 bits (569), Expect = 0.0
 Identities = 578/581 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattctgagccgtgcctgaccacagatggcttatctgaccatgtccagaaggaactgc 62
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ggaattctgagccgtggctgaccacagatggcttatctgaccatgtccagaaggaactgc 724

                                                                       
Query: 63  ttttgccctaagggtgtaaaccaaaagatgagctacagaaatgattaggaggaggtggaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttttgccctaagggtgtaaaccaaaagatgagctacagaaatgattaggaggaggtggaa 664

                                                                       
Query: 123 aggccccaacatggtgaggatcagagagacacaaggggaaagaggaaaggcaggagactt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aggccccaacatggtgaggatcagagagacacaaggggaaagaggaaaggcaggagactt 604

                                                                       
Query: 183 tattcacactgggggaggccagttcacaaggctgctatcagaaatgcaccacctctacta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tattcacactgggggaggccagttcacaaggctgctatcagaaatgcaccacctctacta 544

                                                                       
Query: 243 acagggacccaccatactcaagcctacaggcacatgcctctattttgatagaacatgagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acagggacccaccatactcaagcctacaggcacatgcctctattttgatagaacatgagg 484

                                                                       
Query: 303 tatggacacaattcctaagagcttacaggtaaagcgtcaccggcttccatgctggcctca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tatggacacaattcctaagagcttacaggtaaagcgtcaccggcttccatgctggcctca 424

                                                                       
Query: 363 cttctgctctcactcagcacttctccaacatcctctgcccttcttccttgaaatcatttc 422
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cttctgctctcgctcagcacttctccaacatcctctgcccttcttccttgaaatcatttc 364

                                                                       
Query: 423 ctaatgttttcttactacataaattgtagattaaaacccttaatgtgttcttcaatggtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctaatgttttcttactacataaattgtagattaaaacccttaatgtgttcttcaatggtg 304

                                                                       
Query: 483 cctcctcatctataggaataagagatctgatgacttcctcctaagccagcacaaaatgga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cctcctcatctataggaataagagatctgatgacttcctcctaagccagcacaaaatgga 244

                                                    
Query: 543 gccatcaggaggatttcatcgtctgtagcccaatccttttc 583
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 243 gccaccaggaggatttcatcgtctgtagcccaatccttttc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)