BAC Information

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BAC

Clone NameMSMg01-106I14
Chromosome17 (Build37)
Map Location 53,019,621 - 53,020,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106I14.T7 (MSMg01no106_i14.b1)MSMg01-106I14.TJ (MSMg01no106_i14.g1)
ACCAG320596AG320597
length1,2811,288
length of high quality
(start - end)
568 (79 - 646)648 (91 - 738)
definitionCHROMAT_FILE: MSMg01no106_i14.b1 PHD_FILE: MSMg01no106_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:07 2005CHROMAT_FILE: MSMg01no106_i14.g1 PHD_FILE: MSMg01no106_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGGTTATCATTCGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATT
CTCTGCTTAGCTCTATTTCCATTATTTATAGGGTTATTTGGTTCTCTAAT
TTCTTGACCCTTTTTGTATTTGTTGATATTAGCCCTCTATTGGATGTGAG
ACTGGTAAAGATCTTCTCCCTAACTGTTGGTTGCTGTCTTGTCCTATTGA
CAGTGTCCTTTGCCTTATAGAAGCTTTGCAATTTTATGAGGTCCTTTTGT
CAATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTACAGGAAATTT
TCCCCTTTCCCCATGTGTTCAAGGCTGTTCCCCAATTTCTCTTCTATTAG
TTTCAGTGTATCTGATTTTATGTGGAGGTCCTTGATCCACCTGGACATGA
TTTTCATACAGGGAGATAAGATTGGGTCAATTTGCATTCATCTATATGTT
GACTTCCAGTTGAACCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCA
CTGGTTTAGCTCCTTTGCCAAAGATCAAGTGATCATAAGTGTGTGGGTTA
ATTTCTGGGTTTTCAATTCTATTCCATTGACATACCTGCCTGTTACTGTA
CCAAAATCATGCAGTTTTTATCACTATTGCTCTGTAGTACAGCTTGAGAT
CAGGGATGGTGATTCCCTCAGAAATTCTTTTATTGTTGAGAATAGTTTTC
CCTATCCACCTTTTTCTGTTATTCCAGATGAATTTGCAAATTGCTCTTTC
TCACTCTATGAATAATAGAGTTGGAATTTTGATGGGGATTGCACTGAATC
TGTTGATTGCTTTCACCAGAATATCCATTTTGACTTATTTAATCCTGTTA
TCCCACCTACCATGTGAAATGTTTCCATCTTCTGAATTCTTCTTTCATTT
CTTTCTTCCAAAATTTGAATTTCTGTCCTACAATTCTTTTACTTACTTAA
ATCCCCGTCATCATATTGGTTATTATTTTGTGTACCCTTGGTAAGTATGT
TGTTCCCTCAATTTTCTTTTCACATTTGTTTTTACCTTTTAATTTAAGAT
AAGCCCACGTGTCTTATTTGCAATAAATTTTATTTTTTCGGCCTCTTTTG
TCTATATTCTTCTTATTCCTTTTCTAATCTCCCCTCTGGTTATATTCTTG
CTGTTTCTCATTATGGTCCTATTTCAACTCCTTCCCTCTTTGTGTGAAAT
TTTTTATCCTTCTCTTGTATAAATTTCTATCATTTTCTCTCTCTTCTGTT
TTCGTCTATCTTCCATCAATATATATCCTTA
NCCCAATAATTTTTNNAAGCATGGAGNCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATTTCTAAAAAGCTA
CAATTTGCCAGAACACACAGGACCCTGCTTCCCACCCAGTGTTATGACTT
ACGTAATTCCCAAGCTCCTCAATGGCCCATTTTTCTGCCTAACAAAATGA
CAAGCACTTTGCAAGTAAGCACATCTATACTTATTTGATGTGGCCCATGC
TTCTTTGTTTCTTTGTCTCCTGGTGGAAATGTTGTGAGATGTTCAATGCA
AAAGCCTGCCAATTTGGCCATTTGAGAAAGCTCCTAGACAACTAGGCATA
CTCTGTTGATCCACCTGCATATTAAGTAAGCCCTGACCAGAAACTGTCAA
AGCATCATCTAATCCCTGCTCCTTGATGAACATGGGCCATCTTATTGGTC
ACGACCCCAAAATATATGAGATACAATTTAATAATGCCACTTTGTTAATC
CTTTGCTTAATATATTTTGAACAAATTCCCTGTTGTAAAAGCAGTGTGTA
ACTGGCATCAGGACTTGAGGTGACCCAACCGCTGGTGGAAACAGCTGCAA
CTTTGCTCTCATGCTAAATGACCTAAGCGGCTTGCATTTCTTAAAGCTTT
CCATTTGGATTTGGGGGAATAACTTTATATTATTGTGAGATTTACCCAGA
ACTAAAAGAAATGATGTGTTAAGTTTAGTATCTGCTAATTAACAAATTAC
TTGCACATCATTGAGAACTGATTCATAAAAACTTATAATATAAAGCAGTT
TTATTCTGTAATTCTCATACCACTATGAAAGAGAGATTATTAATATCCCA
TTTGACTGAAGGCCCTAAAAGACTGTTGTTTCCTTTTGTTTTTTATCACT
AANGGCTGAACATATTTTGTAAATTGCCCCATAGAATTAAATTCTAGGAT
TTAACTTTATTTACTTAAGCTTTATAAAAATATCACAGTGATTTATTTGG
ACCGGAAAAAGAGTACATATTTAATTTTAAGTCTTGTTTTCCTGGTCCCT
TTAACCCTAAGGTATTCTTGTTTAGAAATCTCTTACCTCCACCTAAAATT
TTGTACAAATGTGTAAAGGTTCAAAAAATTTTTCTTAANCTAAATGTCAT
TCTCATGTTTATAAGAATGTGGACCAAAACAATATCTCCGAAAATTTCTC
TTATAACAAAACAATTTTCTCTGTGTGATGCAACAAGAAACACCCCCCTA
TAAAAATAAAATTCAAATNATCTTTGTCCTCTAACACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_i14.g1 MSMg01no106_i14.g1 CHROMAT_FILE:
MSMg01no106_i14.g1 PHD_FILE: MSMg01no106_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:07 2005
         (648 letters)



>mm_chr17_53019421_53020467
          Length = 1047

 Score = 1114 bits (576), Expect = 0.0
 Identities = 630/648 (97%), Gaps = 1/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaagctacaatttgccagaacacacaggaccctgcttcccacccagtgttatgactt 60
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 201 taaaaagctacaatttgccagaacacacaggagc-tgcttcccacccagtgttatgactt 259

                                                                       
Query: 61  acgtaattcccaagctcctcaatggcccatttttctgcctaacaaaatgacaagcacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acgtaattcccaagctcctcaatggcccatttttctgcctaacaaaatgacaagcacttt 319

                                                                       
Query: 121 gcaagtaagcacatctatacttatttgatgtggcccatgcttctttgtttctttgtctcc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 320 gcaagtaagcacatctatacttatttaatgtggcccatgcttctttgtttctttgtctcc 379

                                                                       
Query: 181 tggtggaaatgttgtgagatgttcaatgcaaaagcctgccaatttggccatttgagaaag 240
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 380 tggtggaaatgttgtgagatgttcaatgcaaaagcatgcccatttggccatttgagaaag 439

                                                                       
Query: 241 ctcctagacaactaggcatactctgttgatccacctgcatattaagtaagccctgaccag 300
           |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct: 440 ctcctagacaactaggcatactctgttgatccacctacataataagtaacccctgaccag 499

                                                                       
Query: 301 aaactgtcaaagcatcatctaatccctgctccttgatgaacatgggccatcttattggtc 360
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagtgtcaaagcttcatctaatccctgctccttgatgaacatgggccatcttattggtc 559

                                                                       
Query: 361 acgaccccaaaatatatgagatacaatttaataatgccactttgttaatcctttgcttaa 420
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 acgaacccaaaatatatgagatacaatttaataatgccactttgttaattctttgcttaa 619

                                                                       
Query: 421 tatattttgaacaaattccctgttgtaaaagcagtgtgtaactggcatcaggacttgagg 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 620 tatattttgaacaaattccctgttgtaaaagcaatgtgtaactggcatcaggacttgagg 679

                                                                       
Query: 481 tgacccaaccgctggtggaaacagctgcaactttgctctcatgctaaatgacctaagcgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tgacccaaccgctggtggaaacagctgcaactttgctctcatgctaaatgaccgaagcgg 739

                                                                       
Query: 541 cttgcatttcttaaagctttccatttggatttgggggaataactttatattattgtgaga 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 740 cttgcatttcttaaagctttccatttggatttgggggaataactttgtattattgtgaga 799

                                                           
Query: 601 tttacccagaactaaaagaaatgatgtgttaagtttagtatctgctaa 648
           ||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct: 800 tttaccctgagctaaaagaaatgatgtgttaattttagtatctgctaa 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space:   661606
Effective search space used:   661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)