BAC Information

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BAC

Clone NameMSMg01-107D01
Chromosome17 (Build37)
Map Location 68,098,989 - 68,099,516
singlet/doubletsinglet
Overlap geneLama1
Upstream genePtprm, Lrrc30
Downstream geneArhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107D01.T7 (MSMg01no107_d01.b1)MSMg01-107D01.TJ (MSMg01no107_d01.g1)
ACCAG321069AG321070
length1,2931,285
length of high quality
(start - end)
528 (122 - 649)547 (123 - 669)
definitionCHROMAT_FILE: MSMg01no107_d01.b1 PHD_FILE: MSMg01no107_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:43 2005CHROMAT_FILE: MSMg01no107_d01.g1 PHD_FILE: MSMg01no107_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTGAAAGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGGACTTTATTTACCCTTTAATTACATTCCAGGGCCTCAAGAGG
TGAGGAGCTGCCTGTTTGCTATGTAAGTAGTCATGGGCAAAAAGGAAATA
ACGAGAAGGAAGCAGACATCCTAACGGCAAAGATCAAAGTTGCCCCAAGG
AACTGGCTGGCACCTTCAGTCAGCAGGAAGTAGTCTAAGGATAGCGTCAC
CGCCTTCCCCTCTGCCCTTTTCTCTCTCCTATCCAGTGTTAGGGTTGAAA
GGGTAGAAGAAGAAGGGTGGAAAAGGGTGGAAGAAAGAAAAACCCGCAAA
CAAAAGAAGACCAGTTAGAGCCAGGTGTGGTGGCCACGCCTTTAATCCCA
GCACTTGGAGGTGGAGGCAGGAGGATCTTTGTAAGTTGGAGGCCAGCCTG
ATCTACATAGTGAGTTCCAGGCTAGACAGAGCAACATAGTAAGACCCTGT
CTCAAAAAACAAAACCTAAACTATATAACCCTGATCTTCGTGGTTGTGCT
TCTTCGGTTGTGTGTAACTGTGTGGGTTGAGGTGTGTGTGACATGCACTT
AGCCTTCCTCGATCCTAGCAGGAAGCCCTTCACTGTGTTCGGGTGGCCAC
AGCCCTGCTAGTTCTCTCTTGAGCGCCAAATATCAGAGCAAAGACATTTA
CTCAGGACTTGATGCACTCTAAGGTGACCCTGATGCCATGTTCTAAACTT
CTCCTCTTCCTCTTCCTTCTTCCTCTTCCTCTTCTTCCTTCATAATTTTC
TACTTTTTTCTCCTTTATCTCTATCTACATTTTTCCTTTTTTTATCTCTC
ATCCCTCTTTTCCTTTCACATTCTTCCTTTCTCTTTCCTCCTTCTTTCTT
TCCTTCTCCCCTTTATCCTTTTCTTTTTTTTCTTCATTTCTCCTCTTTTC
ATTCTTCCTCTACTCTCTTTTTCTTTCCTTCTTTATTCTCACTTACTTAT
TATTCTTTTTTTCCTTCCTCTACACCTTTTCCTCTCTTTAATCTCATCAT
TCCCCTTATCTTATTTATATCTTTTATCTCTCTCCTTCCATCTTTCTACT
ATCACTTATATCCATATATCCTTCTCTTCTTTTCCTACCTTCTTTTATTT
TAACATTTCATCTATCTTTCTACTCCATATTCTCATCTCTTTTGCAGTCT
CCTTATCTTTTTTCCATTTTACTTCATCTTCCATAACTACCCATCCTTTA
TACATAATCCATCCTCTCTCTTAACTTCTTCTATAATAATGCC
ATTTTTCTTTNTAACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTAATTACTAGTTTTTCTAGGGAGA
GTCTGTTACTGCACCTTCTTTTACATTTTTTTTATATTTAAAAAATGTAT
GTTTCCCTCGACGTTTTTGAAAGCTATCTCACTGGGTAAATAGTTCTGAG
TTGATCTTTAATTAAAAAAAAAAATACTTACAAGCGCTGTTTCATTCTGA
CTGGTGTGAGGTGTAATCTCAGGGTAGTTTTGATTTGCATTTCCCTGATG
ATTAAGGATGTTGAACCATTTTTTAAGTGCTTCTCAGTCATTCGGTATTC
CTCAGTTGAGAATTCTTTGCTTAGCTCTGTACCCCATTTTTTAATAGTGT
TGTTTGTTTTCCTGGAGTCCAACTTCTTGAGTTCTTTATATATATTGGAT
ATTAAATCCCCTATTGAATTTAGGATTGTTAAAGATCTTTTCCCAATCTG
TTGGTTGCCTTTTGGTTTTATTGACAGTGTCCTTTGTCTTACATAAGCTT
TGCAGTTTTATGAGGTCCCATTTGTTGATTCTTGATCTTACAACACAAGC
CATTGCTGTTGTGTTCAGGAATCTTTCCCCTCTGCCCATATCTCCGAGGC
TCTTCCTCACTTTCTCCTCTATAAGTTTCAGCAGATGCTGGCGAGGATGT
GGAGTAAGAGGAACACTCCTCCATTGCTGGTGGGATTTGCATGCTGGTAT
AACCACTCTGGAAATCATTTTGTTGTTTCCTCAAACCATTATACATAGTT
CTACCTAGAAGATCCAGGAATACCACTCTTGCGTATATACACCAGAAAAT
GTTCCAACATGTAATAAGGACTCATGTTTCCCATTATGTTCATACTACTC
CTTATTTATTAATATAACGAACCCTGGTAATGAACCCAATATGTCCTTTC
ACCATAAGAATGGTATACTTAAAAATGAGGGTACTTTTACCCAAATGGGA
GTATTACTCCTCCTTTTAAATACCATTGAATTTTTTTAAAATTTTTTAAA
ACAATTGGTATGATATCTGGGAAGGATTTTCTTCCTATAGGTAAGTTATA
CCCTTTTTCCATAAAAAATCCTCCTATGGAATTGCGCCCTTCCCTGGTAA
ACGGGGTAATTTTATCCCCTCAAATATCTCTCAAAACTCTCTTTTTTACA
TGGGCGTGAATAAACAATCATATCTCTTCGGTGTGGATGCTCTCATGCAT
CTTATTATATCTCTGCTAAATCCATAATATTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_d01.b1 MSMg01no107_d01.b1 CHROMAT_FILE:
MSMg01no107_d01.b1 PHD_FILE: MSMg01no107_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:43 2005
         (528 letters)



>mm_chr17_68098789_68099716
          Length = 928

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaagtagtcatgggcaaaaaggaaataacgagaaggaagcagacatcctaacggcaaa 60
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 201 tgtaagtagtcatgggcaaaaaggaaatatcgagaagaaagcagacatcctaacggcaaa 260

                                                                       
Query: 61  gatcaaagttgccccaaggaactggctggcaccttcagtcagcaggaagtagtctaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcaaagttgccccaaggaactggctggcaccttcagtcagcaggaagtagtctaagga 320

                                                                       
Query: 121 tagcgtcaccgccttcccctctgcccttttctctctcctatccagtgttagggttgaaag 180
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 taacgtcaccgccttcccctctgcccctttctctctcctatccagtgttagggttgaaag 380

                                                                       
Query: 181 ggtagaagaagaagggtggaaaagggtggaagaaagaaaaacccgcaaacaaaagaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtagaagaagaagggtggaaaagggtggaagaaagaaaaacccgcaaacaaaagaagac 440

                                                                       
Query: 241 cagttagagccaggtgtggtggccacgcctttaatcccagcacttggaggtggaggcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagttagagccaggtgtggtggccacgcctttaatcccagcacttggaggtagaggcagg 500

                                                                       
Query: 301 aggatctttgtaagttggaggccagcctgatctacatagtgagttccaggctagacagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggatctttgtaagttggaggccagcctgatctacatagtgagttccaggctagacagag 560

                                                                       
Query: 361 caacatagtaagaccctgtctcaaaaaacaaaacctaaactatataaccctgatcttcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacatagtaagaccctgtctcaaaaaacaaaacctaaactatataaccctgatcttcgt 620

                                                                       
Query: 421 ggttgtgcttcttcggttgtgtgtaactgtgtgggttgaggtgtgtgtgacatgcactta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggttgtgcttcttcggttgtgtgtaactgtgtgggttgaggtgtgtgtgacatgcactta 680

                                                           
Query: 481 gccttcctcgatcctagcaggaagcccttcactgtgttcgggtggcca 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttcctcgatcctagcaggaagcccttcactgtgttcgggtggcca 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)