BAC Information

Click to search

BAC

Clone NameMSMg01-108D07
Chromosome17 (Build37)
Map Location 36,681,676 - 36,681,842
singlet/doubletsinglet
Overlap genenone
Upstream geneCdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
Downstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D07.T7 (MSMg01no108_d07.b1)MSMg01-108D07.TJ (MSMg01no108_d07.g1)
ACCAG321716AG321717
length7421,461
length of high quality
(start - end)
168 (84 - 251)---
definitionCHROMAT_FILE: MSMg01no108_d07.b1 PHD_FILE: MSMg01no108_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:59 2005CHROMAT_FILE: MSMg01no108_d07.g1 PHD_FILE: MSMg01no108_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTCTCTCATAATTTGCGGCGCTATAAGACTCACTTTCGTACGGGCCG
CGGAATCTTGAATTACTNTAGCGAGAGCATGNGATGTGCTGTTCAGTATG
TCACCATTTAAACACATTTATCTCCCGTGCTTTTTGTCTATAGGACTTTA
AGAGAGATGCCTTAATATTCCAGCCATACAATATCTGTTCTGAATTCTCC
TCCAATGTGGCTTCAAGACCTGGTGCCTTCTCTTTCTACTTCTGACTGTG
ACTATGCACATGTCTTCCCAGCACTATGTAAGAGGTCATGGTCCGCAATA
AACTTCATCTCCACCCTTTTATATTTGTACCTCAGCAATCTCTCATGCTT
CATCACAGACTTATATTTCCACACCCCCCTTCTGATTGAACTTTAACTTT
TACTGCAATGCAACTCCGCGCTTCCTGATTCAATAACACATTTGTTCATG
ACTTTGAACCGTCTCGACTTATTGTGTTTTTTGACTCATGTCTTGATCAC
GATTTACACTTATGGCCCAATCTCACTTGCTCACATTCCTTATCAACCTC
TGTGCCCCGTTGTAATTATTACTCTTGTCAATACATACATTGGTTTTTCG
CTCTTTACTCAACATTAGCTTTGTTTTTTTTACTTATTTTCTTCTCATTT
TTCTATTCCCGGCTCCTTTTCTTTAAAATAGTCTTGACGACACCCATCTT
CTTCTTTTCTACCTTACATCACTTATGCCTTTATCGTTTTCN
TTTTTNTTTTTTTTNTTTTTTNTNNTTTNTNNTTTTTNNTATTTTTTTTT
TNNTTNNNTTTNNNTTTTTTTTATTATTTNTNNNTNCNTTNNNTTTTNNN
TTTCNNTTTTNNNNCTCTCTNCTTATTTATCTCTCCTTNNCTTTTTTCTA
TTATCTTTNCTTNTATTATTTTTTTTTTTCTTATTACTATTTCTTTCATT
CTATCTTCATCCCTATTATTCACTCCCTNCCTCCACACACGATTCTACTC
CATCTCNCTCTCTCCCCGCCACCGACCGTATCGCTGTCTCTTGACATCCT
CTCACTACTAAAAGTCCGTAAATACTATATATCCTACTCACTTTCCTACG
CCTCTTCATCTTCCACCCNNCACCCTCCTCACTCCTACTCGNTATACTCC
NTCTCTTCCATTTNCACTCTCCTTATCTCTCATTCATTCTCACTTTCATA
CTACTGCATACCCTCTACTCGACTCGATCATATACGCCTACCTAATTCAC
GTTCGTATTCAATTACTGATCGTTAGATTAACGCATTATTATATATATAT
NCTAATATATCGCTCTCTAGTTTTACGATATACTGATATCATATCATCTC
ATATATGCATACTCGACTCACCACTATATATATTATAATACTGTACATAG
CTGAAACTTTATATTCTAACGAACNTATACACATAATATATATACTGCGT
CTCGAGGTATACTCATCTGTCTCTATCTGTATACCGACTAACCATGTTAT
TACCTCACTCCACATATCAACCTCCGCTATCTCATATATAGTATCTCTAT
CTTAATAACTCCTGAGCTCTTATNCTATGTCGCTACTACGTCTCTTTCTG
ACATATATNTAATTNCTATTCACTCACGCTCCACACCGCATNTTATGCCC
ANTACCAGTATTCTATAACTTCCNCNCTTATGATCCAAATCAACACACGN
NTGCATATATCATTATACNACGATATATAAAAATATCGCGTATATGATAG
TAGAGTCGCGACGATGTACTAACATACNAACCGATCGAGTGCCGACTACG
ATCGTGATCCGTAGTGTTGAGTGTATGACGATATTAGATATGTATATTAA
TCTACGATTGCTGGTAGCGCTGTATTCTAGCGCATAGGATTATGTATATC
TGCATNACTCGTGTTGGTAATATGATTTAAGTAGTGACATATAGGTCCAA
TATGCGCTAGTACGNACACTTTCGGATTGGAGACGCACAAGGTGTTAGTA
TCTAATAGCTACAGCTATCANACGCGCTCATATATTATCATTGTGCATAT
CAGCACCTAAGTACCACGCTAGACCGCGCACGATGAATAAATATCGAAGC
CAGTCATCACCTTAATATAGTATATATATCATGCGNTTATCTCGCCGTAT
CACTNACACGCCTCNGCCCGCCCGTTTTATCGTATTATACACATTTCACA
CAGTCTCGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d07.b1 MSMg01no108_d07.b1 CHROMAT_FILE:
MSMg01no108_d07.b1 PHD_FILE: MSMg01no108_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:59 2005
         (168 letters)



>mm_chr17_36681476_36682042
          Length = 567

 Score =  263 bits (136), Expect = 4e-75
 Identities = 161/170 (94%), Gaps = 5/170 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtgctgttcagtatgtcaccatttaaacacatttatctcccgtgctttttgtctat-- 58
           |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |  
Sbjct: 367 atgtgctgttcagtatgtcaccatttaaacacatttat-tcctgtgctttttgt-t-tgc 311

                                                                       
Query: 59  aggactttaagagagatgccttaatattccagccatacaatatctgttctgaattctcct 118
           ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 agggctttaagacagatgccttaatattccagccgtacaatatctgttctgaattctcct 251

                                                             
Query: 119 ccaatgtggcttcaagacctggtgccttctctttctacttctgactgtga 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccaatgtggcttcaagacctggtgccttctctttctacttctgactgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 567
Length adjustment: 8
Effective length of query: 160
Effective length of database: 559
Effective search space:    89440
Effective search space used:    89440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)