BAC Information

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BAC

Clone NameMSMg01-108G11
Chromosome17 (Build37)
Map Location 56,934,124 - 56,934,643
singlet/doubletsinglet
Overlap geneRfx2
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546
Downstream geneAcsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108G11.T7 (MSMg01no108_g11.b1)MSMg01-108G11.TJ (MSMg01no108_g11.g1)
ACCAG321861AG321862
length830710
length of high quality
(start - end)
---564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no108_g11.b1 PHD_FILE: MSMg01no108_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:15 2005CHROMAT_FILE: MSMg01no108_g11.g1 PHD_FILE: MSMg01no108_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANGAGCATCCGCGG
AATTCCCACCATATACCTCCCTGAAAACCTATAGGAAATCTAACAGATAA
TGACCTGCCTCTNTGGGTCCAAGCTCCTGACTGAGCTTTNTGAGGGTTGG
CCCCGGAGGAGTCGGATGATGCGATAGCGTACGAGAGATACCTTGCATCT
GATCGTCCCCCCCTCCTCNCCCTCCCCCCCNCCTCCTTCCCCCTCTCCTT
CTTTCCCTTCTCCCCCCTCCTCTTCCCTCTCCTCCCCCCTTCTCCCCCCT
CTCCCTCTCCCCCTCCCCCCTCCCCTCCCCCTCCTCCTCTTCCTCCTCTC
CTCTCCCTCCCCCCTCTCCTCCCCCTTTCTTCCCCCCTCCCTTCCCCCCC
CCCCCCCCCCCCCCCTTCCCCCCTTTTTCCCCCTCTCCCCCCTCTCTCCC
CCTTCTCCCCCCCCTCCTCCTTCCCTCCCCCCTTCCCCCCCTCCTCCCTC
CCTCCCCCCTTCCTCCCCCTCCTCCCCCCTCTTTTCCCCCCCTCCCCCCC
CCTCCCTCCCCTTCCCCCCCCCCCTCCCTCCCTCCCCCCTCTTCCCCCCC
TTCCCCCCCCCCTCTTCTCCCCTCCCCCTCTTCCCCTCCCCCCCTCCCTC
TTCCCCTCCCCCTTTCCCCCCCCCCCTCCCCCTTCCCCTTCCCCCCTTTC
CCGCCCTCCTTCCCCCCCTTCCCCCCCTCTTCTCCCCCCTTCTCCCCCCT
TCTCCCCCCCCTCCCCCCCCCTCCCCTCCCCCCCCCCCTCCCCTCCCCCC
CTTCTCTTCCCCCCTCCCTCCCCTCCCCCC
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGCCTGGTGTGACAAAAAAAAAAAAA
AAAAAAAAAAAGAGCCTGGACATAGACTGTGGGAATAAGGAGACAGACTG
ACAGAGTAAGCAGACAAACTGAGAGAGTAAGGAGATAGACTGAGAGAGTA
AGGAGATAGACTGAGAGAGTAAGGAGATAGACTGAGAGAGTAAGGAGACA
GAGACTGAGGGAGTAAGGAGATAGACTGAGGGAGTAAGGAGATAGACTTA
GACCGTAAGGAGAAGGAAGTGAATTAGCCTAGAGATAGACTTACACAGTA
AGGAGAGGGGAGATAATTAAAGCTAAATGCATAGAGGAATTAAGTAATCG
ATCTTAAATTATATGTCAATGAGCAGGGTGTAAGTAGAAAAACTTACCTC
ACACATGTAATAGAAGCTTATGCTAATTCAAGTTACATAAAAAGAAGGAA
ACATATGTACTCACAGATATATTAATTTCCATAGAAGGGAAGATTTAAGT
ATACTTAGATAAATAAATAAATGAGGCTTTTGATCTTAAATTATAGTTCC
AAAAGCAGGGGGTAGGAAGACTAACCTATCTCAGACAGTAGAAACTTAGG
CCTCAATCTCACTATTTAAAATTAATCATGTAAGAACAAAACAGGAGATG
GTAGGGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_g11.g1 MSMg01no108_g11.g1 CHROMAT_FILE:
MSMg01no108_g11.g1 PHD_FILE: MSMg01no108_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
         (564 letters)



>mm_chr17_56933880_56934843
          Length = 964

 Score =  832 bits (430), Expect = 0.0
 Identities = 512/564 (90%), Gaps = 44/564 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagcctggtgtgacaaaaaaaaaaaaaaaaaaaaaaaagagcctggacatagactgtg 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 245 tttagcctggtgtgac--aaaaaaaaaaaaaaaaaaaaaagagcctggagatagactgtg 302

                                                                       
Query: 61  ggaataaggagacagactgacagagtaagcagacaaactgagagagtaaggagatagact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||| 
Sbjct: 303 ggaataaggagacagactgacagagtaagcagacaaactgagagagtaagg----agac- 357

                                                                       
Query: 121 gagagagtaaggagatagactgagagagtaaggagatagactgagagagtaaggagacag 180
                       ||  |||||||| ||||||||||| ||||||||||||||||    |  
Sbjct: 358 ------------ag--agactgagggagtaaggagacagactgagagagtaag----c-- 397

                                                                       
Query: 181 agactgagggagtaaggagatagactgagggagtaaggagatagacttagaccgtaagga 240
           ||||                 |||||||| ||||||||||||||||||||||||||||||
Sbjct: 398 agac-----------------agactgagagagtaaggagatagacttagaccgtaagga 440

                                                                       
Query: 241 gaaggaagtgaattagcctagagatagacttacacagtaaggagaggggagataattaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggaagtgaattagcctagagatagacttacacagtaaggagaggggagataattaaa 500

                                                                       
Query: 301 gctaaatgcatagaggaattaagtaatcgatcttaaattatatgtcaatgagcagggtgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gctaaatgcatagaggaattaagtaatcgatcttaaattatatgtcaaagagcagggtgt 560

                                                                       
Query: 361 aagtagaaaaacttacctcacacatgtaatagaagcttatgctaattcaagttacataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtagaaaaacttacctcacacatgtaatagaagcttatgctaattcaagttacataaa 620

                                                                       
Query: 421 aagaaggaaacatatgtactcacagatatattaatttccatagaagggaagatttaagta 480
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaaagaaacatatgtactcacagatatattaatttccatagaagggaagatttaagta 680

                                                                       
Query: 481 tacttagataaataaataaatgaggcttttgatcttaaattatagttccaaaagcagggg 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 tacttagataaataaataaatgaggcttttgatattaaattatagttccaaaagcagggg 740

                                   
Query: 541 gtaggaagactaacctatctcaga 564
           ||||||||||||||||||||||||
Sbjct: 741 gtaggaagactaacctatctcaga 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)