BAC Information

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BAC

Clone NameMSMg01-110E04
Chromosome17 (Build37)
Map Location 70,572,380 - 70,572,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110E04.T7 (MSMg01no110_e04.b1)MSMg01-110E04.TJ (MSMg01no110_e04.g1)
ACCAG323232AG323233
length733798
length of high quality
(start - end)
490 (63 - 552)138 (91 - 228)
definitionCHROMAT_FILE: MSMg01no110_e04.b1 PHD_FILE: MSMg01no110_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:47 2005CHROMAT_FILE: MSMg01no110_e04.g1 PHD_FILE: MSMg01no110_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCAGACCCACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCTTTGTGTATTCGTATCACTATAAACTAT
AAAAGGCCATGAAGAATGCCAGCATTTAGGCAAGTTGCCAAGATAATCAG
AGGACATGATGTGACCTGGTGACGGAACTAGTTTTCCTACTTACATAACG
AGTCTAGTTTCCAAACTGCTGCTAAAATTGTTTGCCTGATATCCTCCTAA
GAGAATATATGTTTGCTAAAATAACGTTCAAAGAAAAGCACTGTTTGGAT
AGCTGTGTTATACAAGATATTTCCCATTGATACAGCTTCTATATCAAAGT
TAAAGCTGTGAGTATTTCAAAGAGAATCACTGTCATGTCATGTGAAGCGA
AGATGAGCCAGTTTGGGTTGAGATTGGATGGGCCATTAAATTTTTTAGGG
ACCCTGGGGATATTCATTACCTCTATGTTGACTCAGAAACCTTTCTTGGT
TTCTACTGACATTGGATTTATTAGCCTAAGAGTACTTCATCAGCTCTAAC
GCCTATATGCCATGGCTAAGTAAAAGTTGGCGAACAGGCGATAGCAGGAG
GAGATAGGGGGCTTTCGAAGGGGAAATCATTCATGGCCTTCCACCATTTG
AAATGTCAATAAATTAATGTTCTTATTTTACAATTTTGATTTATTAAGTA
TCAACTTCTAATTTTTTTTTTTTTATTTAATTA
ACTACAACATAAACCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTCAG
AGTAACTTTAGAGTGTCTTAACTATGTTAAAGCAAGGGCATTGTATGTAC
TTAATAATTAACTTTGTGGCTTTTTATTTGTGGGGTGTGTGTATCTGTAT
GTGTGTGTTTATGCACATATGTGTATGTGTCTGTTCTTCCCCCCTATTCC
CCCCCTCTTCTCCTCTTCCCCCCCTCCTTTATTCCCCACCATTTCCCCAC
CCTATCCTTCCCTTCCCCCCCCCTTTCTCTTCTCCCCTTTTTTTTCTCCC
CCTCTATCCTTTCACCCCTCCCTCCCCCCTCTCTTCCTCCCCCTCTCCCC
CTCCCCCCCTCTTTTCCTTCCCCCCCTCCTCTCCTCCCTCCCCCCCCCCC
CTCTCCCCCTCTCTCTCCTTCCCCCCTCCTTTTTTTCATCTCCCCCTCTC
TTCCCTTCTCCTTTCCTCCCCCCCCCCTTTTTTCCCCCCCTCTTTTTCCT
TTCTTCCCTCTTCCCCCCCCCCCCTTCTTCTCCTCCTTTCCTTCCCCTCC
CTTTTCTTCCCCTCCCCTTTCCCCCCTTTTTCCCTTCTTCCCCCCTTTAT
TTCCTCCCTCTTCCCCCTCCTCTTCCCTTCTCTCTTCACTTCTCCCTTTC
CCCTTATCTTTCCCCCCCTCTCCTCTCTCCCCTCTTCCCCTCTTTTCCTT
ATTTCCCCCCCCCTTCTTTTATCATCCCTCCCCCCCTCTTTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_e04.b1 MSMg01no110_e04.b1 CHROMAT_FILE:
MSMg01no110_e04.b1 PHD_FILE: MSMg01no110_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:47 2005
         (490 letters)



>mm_chr17_70572176_70573065
          Length = 890

 Score =  872 bits (451), Expect = 0.0
 Identities = 478/487 (98%), Gaps = 2/487 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtgta-ttcgtatcactataaactataaaaggccatgaagaatgccagcat 63
           |||||||||||||| || |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctttgtgtagtt-gtatcattataaactataaaaggccacgaagaatgccagcat 263

                                                                       
Query: 64  ttaggcaagttgccaagataatcagaggacatgatgtgacctggtgacggaactagtttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaggcaagttgccaagataatcagaggacatgatgtgacctggtgacggaactagtttt 323

                                                                       
Query: 124 cctacttacataacgagtctagtttccaaactgctgctaaaattgtttgcctgatatcct 183
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 cctacttacataacgagtctagtttccaaactgctgctaaatttgtttgcctgatatcct 383

                                                                       
Query: 184 cctaagagaatatatgtttgctaaaataacgttcaaagaaaagcactgtttggatagctg 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 cctaagagaatatatgtttgctaaaataatgttcaaagaaaagcactgtttggatagctg 443

                                                                       
Query: 244 tgttatacaagatatttcccattgatacagcttctatatcaaagttaaagctgtgagtat 303
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttatacaaaatatttcccattgatacagcttctatatcaaagttaaagctgtgagtat 503

                                                                       
Query: 304 ttcaaagagaatcactgtcatgtcatgtgaagcgaagatgagccagtttgggttgagatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaaagagaatcactgtcatgtcatgtgaagcgaagatgagccagtttgggttgagatt 563

                                                                       
Query: 364 ggatgggccattaaattttttagggaccctggggatattcattacctctatgttgactca 423
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 564 ggatgggccattaaattttttagggaccctggggatattcattgtctctatgttgactca 623

                                                                       
Query: 424 gaaacctttcttggtttctactgacattggatttattagcctaagagtacttcatcagct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaacctttcttggtttctactgacattggatttattagcctaagagtacttcatcagct 683

                  
Query: 484 ctaacgc 490
           |||||||
Sbjct: 684 ctaacgc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)