Query= MSMg01no111_k05.b1 MSMg01no111_k05.b1 CHROMAT_FILE:
MSMg01no111_k05.b1 PHD_FILE: MSMg01no111_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(680 letters)
>mm_chr17_91986017_91987096
Length = 1080
Score = 1249 bits (646), Expect = 0.0
Identities = 672/682 (98%), Gaps = 4/682 (0%)
Strand = Plus / Plus
Query: 1 tgaagaggcactcagctctcgagattgccac--cctcagagagggttggtgcacgttatg 58
||||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||
Sbjct: 201 tgaagaggcactcagctctcgagattgccacatc--cagtgagggttggtgcaagttatg 258
Query: 59 cacaaccactagacattcatgtggtccccagtagctgctccaagcagagacatacccatg 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 cacaaccactagacattcatgtggtccccagtagctgctccgagcagagacatacccatg 318
Query: 119 tactctagtagtaatagagccatagacattgacactgacctttgtccctgtaaagccatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tactctagtagtaatagagccatagacattgacactgacctttgtccctgtaaagccatg 378
Query: 179 gacccagatgtggccctcagctgcaacgggatcttggacttcactatggccccagggtat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gacccagatgtggccctcagctgcaacgggatcttggacttcactatggccccagggtat 438
Query: 239 tcaaaacaggatacttctccccaccatcaagttccatctttcttcataatggtcaagctg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaaaacaggatacttctccccaccatcaagttccatctttcttcataatggtcaagctg 498
Query: 299 ctccacttctctttgtcacccatgtaaccactgcattcttattcaccgtggtgtcttcta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctccacttctctttgtcacccatgtaaccactgcattcttattcaccgtggtgtcttcta 558
Query: 359 ctgctggatagccacaaggctggatgatatcctccatttgtgctacataaagttgctata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgctggatagccacaaggctggatgatatcctccatttgtgctacataaagttgctata 618
Query: 419 agcgtgtgtctaggaactggctgtgctgggagctgaagggcaggtctgtgggtggcatgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcgtgtgtctaggaactggctgtgctgggagctgaagggcaggtctgtgggtggcatgg 678
Query: 479 tcgtccacaggcctctgacttcctccttctatgctgtactgcctggatttgatttgattt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcgtccacaggcctctgacttcctccttctatgctgtactgcctggatttgatttgattt 738
Query: 539 gatttgattaaattttaaggagtcctagacataagacagctttggctccccaaccaaaca 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gatttgattagattttaaggagtcctagacataagacagctttggctccccaaccaaaca 798
Query: 599 tcaaactaggaaaaaaagactgcccctactctgtgctgcccctgactgacataaaaacaa 658
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 799 tcaaactaggaaaaaaagactgtccctactctgtgctgcccttgactgacataaaaacaa 858
Query: 659 cacctccaactaggcccattgc 680
||||||||||||||||||||||
Sbjct: 859 cacctccaactaggcccattgc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_k05.g1 MSMg01no111_k05.g1 CHROMAT_FILE:
MSMg01no111_k05.g1 PHD_FILE: MSMg01no111_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(551 letters)
>mm_chr17_92136087_92137037
Length = 951
Score = 648 bits (335), Expect = 0.0
Identities = 395/415 (95%)
Strand = Plus / Minus
Query: 98 aagctccttctcatcagcttgagttatctatgagttcaatcaaaggtgggttgtaccaat 157
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 416 aagctccttctcatcagcttgagttatctatgagttcaatcataggtgggtcctaccaat 357
Query: 158 ataattatgagctggtattatgccattacagagactttctagaatagagagactcttctt 217
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 356 ataattatgatctggtattatgccattacagagactttatagaatagagagattcttctt 297
Query: 218 caaagatgatatttaaaaatgcctggaaggctatcccatgcttatggattggcaggatta 277
|||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct: 296 caaagatgatattttaaaatgcctggaaagctatcccatgcttgtggattggcagaatta 237
Query: 278 atatattaaaaatggccatcttgccaaaagtaatcaacagattcaatgcaatccccatca 337
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atatagtaaaaatggccatcttgccaaaagtaatcaacagattcaatgcaatccccatca 177
Query: 338 aaattccaacttaattttttacagagttagaaaggaaaaatttcaaattcatctggaata 397
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||
Sbjct: 176 aaattccaacttaattcttcacagagttagaaaggaaaaattgcaaattcatctggaata 117
Query: 398 acaaaaatcctaggatagcaaaaactattctcaacaataaaagaacttttgaaggaatta 457
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 116 acaaaaatcctaggatagcaaaaactattctcaacaataaaagaacttctggaggaatta 57
Query: 458 ccatctctgacctaaagctgtactacagagcacttgtgacaaccaaaacaaaaaa 512
||||| |||||||||| ||||||||||||||| |||||| |||||||||||||||
Sbjct: 56 ccatccctgacctaaatctgtactacagagcaattgtgaaaaccaaaacaaaaaa 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
