BAC Information

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BAC

Clone NameMSMg01-112J10
Chromosome17 (Build37)
Map Location 12,381,111 - 12,381,554
singlet/doubletsinglet
Overlap geneAgpat4
Upstream genePark2
Downstream geneTdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112J10.T7 (MSMg01no112_j10.b1)MSMg01-112J10.TJ (MSMg01no112_j10.g1)
ACCAG324960AG324961
length718726
length of high quality
(start - end)
129 (71 - 199)444 (77 - 520)
definitionCHROMAT_FILE: MSMg01no112_j10.b1 PHD_FILE: MSMg01no112_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:47 2005CHROMAT_FILE: MSMg01no112_j10.g1 PHD_FILE: MSMg01no112_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACATTTTCCGAGGGGCGCGGAATCAACTCTGT
TCCCAGACAGAGAATCAGCGCTCTTAAATGCTGAAGCATCTCTCCAGCCC
CACACTTTTTTTTTTTTAAAGACAAGGGCTAGAGAGATGGCTCAGTGGTT
AAGGGCACCAACTGCTCTTCTAGAGGACCCGGGTTCAAGTCCCAGCACCC
ACTTGGCAGCCCCCAACTGTCTGCAACTCCAGCTCCAGGGGAGCCATGGC
ACCAGGCATGCATGTGGTGCACATCCTTGTGTATACACATAAATAAAAGT
AAAAATTTAATAATTTTTACATGGCAGCTTATCTCCATTATCAAATGGAA
CATGCCGCGCATGTTCTAATTTTTTCCCCCTCGTTTTTAGTGTTCGTCTT
ATTCACCGTACAAAAGAAGGGACTTCATTCTGAATTTTTTTTTCCAAGAT
TTTTTTTTTTAAGTGACGGGACGTTGTGCCTGCACGCATGTCCGTGACCC
ATGTGCGCATGTCTGGTACCCCCATAGGGTATCCGTATCCTTCTGATTTA
CAGCCATATCAGCTATGAACTATCATTTGCGCGATACGAATTCCCCCCAT
TTTCTCTTCCCCCAGCCCCCGCGTTCCTAGCCGCTCACTCCGGTTATTGT
TTTTTTCCGTTATATACGCTTGTGTACATTTTCGCCACTTTGCTTCGTAA
TTTGCTCCCCTCTTTATN
CCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTTGGGGCTCACATGGTAGA
AGGAAAAGAACTGACTTCCACAAGTTGTCCTTTGACTTTCACACATGCAG
GTCATGGAAACACCCAAACATATATACAAAGAAACACAAATAAAATACAC
ACATGCAAATAAATGTGATTAAAAGTATAAATAAATTATATGTTCTCCTG
CCAGTGGGACCAGTGAATCTCTGTATACCTCTCAAGTCCTCCCTGCATAC
AGCTCTGAGGACCACACACATAATTCTGAAGTCCTCTAGTCGCATACTCT
GAGGTCCTCCCCTCCCATAGCTCTGGGGACCTCCCTCATGTAGTTCTGAG
GTCCTTCCTACTTGCCTTGCATCTTTGGGTTCCTCAATACAATTCTGTGA
CATTCTAATCATACAGCCCTGAGGTCCTTCCTCCATAGCTCTGGGGTCCT
CTCCTAACACCAATTGTTACCCGTGTTCTGTACCTGCTGAGGCAAACAGG
CGAAATACAAGGCATAAAACTGATGTTTAATTTCCCATACACTGCACATT
ATTTGCTCACATAAACATGACTGCGCAGCATCAAATGCAAGACAGATTTG
TATCACACGATCATTTTTGTTCCACCGCCATTCAAATACCACAACATTAT
TCATTGTTTGCCTGATATTCACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_j10.g1 MSMg01no112_j10.g1 CHROMAT_FILE:
MSMg01no112_j10.g1 PHD_FILE: MSMg01no112_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:47 2005
         (444 letters)



>mm_chr17_12380809_12381652
          Length = 844

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccttggggctcacatggtagaaggaaaagaactgacttccacaagttgtcctttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 catccttggggctcacatggtagaaggaaaagaactgacttccacaagttgtcctttgac 687

                                                                       
Query: 61  tttcacacatgcaggtcatggaaacacccaaacatatatacaaagaaacacaaataaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttcacacatgcaggtcatggaaacacccaaacatatatacaaagaaacacaaataaaat 627

                                                                       
Query: 121 acacacatgcaaataaatgtgattaaaagtataaataaattatatgttctcctgccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acacacatgcaaataaatgtgattaaaagtataaataaattatatgttctcctgccagtg 567

                                                                       
Query: 181 ggaccagtgaatctctgtatacctctcaagtcctccctgcatacagctctgaggaccaca 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 566 ggaccagtgaatctctgtatacctctcaagtcctccctgcacacagctctgaggaccaca 507

                                                                       
Query: 241 cacataattctgaagtcctctagtcgcatactctgaggtcctcccctcccatagctctgg 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 506 cacataattctgaagtcctctagtcgcacactctgaggtcctcccctcccatagctctgg 447

                                                                       
Query: 301 ggacctccctcatgtagttctgaggtccttcctacttgccttgcatctttgggttcctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggacctccctcatgtagttctgaggtccttcctacttgccttgcatctttgggttcctca 387

                                                                       
Query: 361 atacaattctgtgacattctaatcatacagccctgaggtccttcctccatagctctgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atacaattctgtgacattctaatcatacagccctgaggtccttcctccatagctctgggg 327

                                   
Query: 421 tcctctcctaacaccaattgttac 444
           |||||||||||||||| |||||||
Sbjct: 326 tcctctcctaacaccagttgttac 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)