Query= MSMg01no113_p13.b1 MSMg01no113_p13.b1 CHROMAT_FILE:
MSMg01no113_p13.b1 PHD_FILE: MSMg01no113_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:33 2005
(481 letters)
>mm_chr17_88275544_88276426
Length = 883
Score = 712 bits (368), Expect = 0.0
Identities = 445/484 (91%), Gaps = 27/484 (5%)
Strand = Plus / Minus
Query: 3 ggaattctgtcttaccc---acccctccccccaactcacagtctgttaggtgaccatcct 59
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ggaattctgtctta--caatacccctccccccaactcacagtctgttaggtgaccatcct 406
Query: 60 ctgtgtatcaggggacaaaacagtagagaactctccactgtaccagggactt-cggttca 118
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct: 405 ctgtgtatcaggggacaaaatagtagagaactctccactgtaccagggacttccagttca 346
Query: 119 gctcagtccgcactgttgcctgtctcctctgcagccagactcagctctgaagctccacct 178
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 345 gctcagtccccactgttgcctgtctcctctgcagccagactcagctccgaagctccgcct 286
Query: 179 ctaacagtgagtcagcagcagccaaccctacagtagcaccctccagccctggtgacctgc 238
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 285 ctaaccgtgagtcagcagcagccagccctacagtagcaccctccagccctggtgacctgc 226
Query: 239 tctgtccccagcgccctgctctatccctggcagcctgctctatcccaggt-agccagctc 297
||||||||||| || ||||||||| ||||||| | |||||||
Sbjct: 225 tctgtccccag-----------------gg--tcctgctctaccccaggtga-ccagctc 186
Query: 298 tatctacgcaccttgcaccttgcctctccattgatttcagcttcccagttttggtttctc 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tatctactcaccttgcaccttgcctctccattgatttcagcttcccagttttggtttctc 126
Query: 358 aaaactcttcactctgacttcttacaggaattccataaacatatgtctggctgtctctgg 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aaaactcttcactccgacttcttacaggaattccataaacatatgtctggctgtctctgg 66
Query: 418 aaatatgttccctctcctacacccatccacccccgccctccactgtatgtgatgtatgat 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 65 aaatatgttccctctcctacacccagccacccccgccctccactgtatgtgatgtatgat 6
Query: 478 ctaa 481
||||
Sbjct: 5 ctaa 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 883
Length adjustment: 10
Effective length of query: 471
Effective length of database: 873
Effective search space: 411183
Effective search space used: 411183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p13.g1 MSMg01no113_p13.g1 CHROMAT_FILE:
MSMg01no113_p13.g1 PHD_FILE: MSMg01no113_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:33 2005
(253 letters)
>mm_chr17_88159316_88159968
Length = 653
Score = 468 bits (242), Expect = e-136
Identities = 248/250 (99%)
Strand = Plus / Plus
Query: 1 ttcgatacattatacatgcagatacagagcatcaacgtgcacaaaataaaaataaataaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ttcgatacattatacatgcagatacagagcaccaacgtgcacaaaataaaaataaataaa 260
Query: 61 ctcaaggaaaaggagagaggaaagaggttctcagccatgctccatggatgttgagaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaggaaaaggagagaggaaagaggttctcagccatgctccatggatgttgagaaaga 320
Query: 121 caggatcagagacttcccaggccacaagccgcagacctggcacttcaggactgtaacttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggatcagagacttcccaggccacaagccgcagacctggcacttcaggactgtaacttg 380
Query: 181 tcagcctgctctatgtcgctctccagggtggacaaccagctagcttggtaagcctgaacc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcctgctctatgttgctctccagggtggacaaccagctagcttggtaagcctgaacc 440
Query: 241 atttgagaga 250
||||||||||
Sbjct: 441 atttgagaga 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
