BAC Information

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BAC

Clone NameMSMg01-113P19
Chromosome17 (Build37)
Map Location 51,873,083 - 51,873,536
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113P19.T7 (MSMg01no113_p19.b1)MSMg01-113P19.TJ (MSMg01no113_p19.g1)
ACCAG325980AG325981
length718699
length of high quality
(start - end)
192 (73 - 264)454 (73 - 526)
definitionCHROMAT_FILE: MSMg01no113_p19.b1 PHD_FILE: MSMg01no113_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:34 2005CHROMAT_FILE: MSMg01no113_p19.g1 PHD_FILE: MSMg01no113_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATTATGCCACACATACACATACACACACAGGTCCAGATTATAC
ATATTTCTTAGAGATTGGTATGGTTGCAGTGGACCATTTTTGTAAGGCAT
CTGAAATAGATATAGATTAGATAGAGATAGAGACAGAGTTAGATAGAGAT
AGAGTTAGATAGAGATAGAGATAGAGATAGATAGAGAGAGAGAGAGAGAG
ATAGAGATAGAGATCCAGGTCCTCTTCCTCCCCCTCCGTTGTTACACTTC
GCCGCCCCCTCGTTTCGCCTGTCTTTCACCTGTTACCTTCCCTTTCTTGT
TTCTGCCCCTTTTCTTATCCCCCCCCCCCCCTTTTCTAGTTTGTCGCATT
TTCACGGCCCTTTTTGTTGGGCCCCCCCCGGTGTTCCACACTCATTCTTA
ACTTTGGCTCCCCCTTTCGCCCTCGTCCGCCCAAACCGGGTTACACCTTT
TCTCTCCCCGCTGGCCCCTTTCTTTGTTTCCCCATCCCCTATTACCACTT
CCCGCCCTCCTTTTTATTTCCTCCTTTTTGTCTTTCTTTCGCCCAGAAAT
TACTTCGCGTTTTTGTCCTTCCCCCTTTATTTTCTTTTCGCCCCCCCCTC
TCGTCCTCTTCCCCTTCGCCAACCCCCCACCGCCTTCCTTCCATCTGTTC
TTTCCCCCCCTTTTTGCG
ATGCATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATACAGCAAATGGTGCACTTCAGAAAAC
TTACTCTTCAAAATAAGAACTCAGTTTCACAAGTAGTTACTGAAGTTTGT
GGAGGCAGTTTTCTTATTTTTAAAGGATAATATGTCAAATAAAATCAAAC
CACTCGGATGTCAGAATTCAGACATTCACATTAATAGGGTTCCATGTAAT
ACATAAACTGCAGCTATGCACAGTTGTACATTCGAATAAATTTACTATCA
GAGTCTTGTATTTTCAAATCCTGCCACAGAAATACATTTAGTGGAGAAAT
GAATGAATGAATGAATGAATGAGAACAGACAATGTAGGAAAAATTTTGAT
CATGCAGAATGGAATAACAATCACATTCTATAGACAGCCCCCTTCATGGT
GCATTTTAATTTTCTTTTTGAAATCATGCTTATTATTGATTTGTGTGTAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGCAACCTCTCTTCCTAATCTTTCT
TTTCTCACCCCTTTTTTCACCTCCTACATTTTTTTTTTCCCCCTACCTTG
TACCCCTATTTTTCTTACGAAATTTGCGGCTCTACCCATTGTCTATTTAC
TTGTCTACTGCCCGGTGTAGAACACAACCGGCCCTTTTTTTCCCCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_p19.g1 MSMg01no113_p19.g1 CHROMAT_FILE:
MSMg01no113_p19.g1 PHD_FILE: MSMg01no113_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:35 2005
         (454 letters)



>mm_chr17_51873062_51873915
          Length = 854

 Score =  855 bits (442), Expect = 0.0
 Identities = 451/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacagcaaatggtgcacttcagaaaacttactcttcaaaataagaactcagtttcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atacagcaaatggtgcacttcagaaaacttactcttcaaaataagaactcagtttcacaa 416

                                                                       
Query: 61  gtagttactgaagtttgtggaggcagttttcttatttttaaaggataatatgtcaaataa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atagttactgaagtttgtggaggcagttttcttatttttaaaggataatatgtcaaataa 356

                                                                       
Query: 121 aatcaaaccactcggatgtcagaattcagacattcacattaatagggttccatgtaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatcaaaccactcggatgtcagaattcagacattcacattaatagggttccatgtaatac 296

                                                                       
Query: 181 ataaactgcagctatgcacagttgtacattcgaataaatttactatcagagtcttgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ataaactgcagctatgcacagttgtacattcgaataaatttactatcagagtcttgtatt 236

                                                                       
Query: 241 ttcaaatcctgccacagaaatacatttagtggagaaatgaatgaatgaatgaatgaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcaaatcctgccacagaaatacatttagtggagaaatgaatgaatgaatgaatgaatga 176

                                                                       
Query: 301 gaacagacaatgtaggaaaaattttgatcatgcagaatggaataacaatcacattctata 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 175 gaacagacaatgtaggaaaaattttgatcatgcagaatggaataagaatcacattctata 116

                                                                       
Query: 361 gacagcccccttcatggtgcattttaattttctttttgaaatcatgcttattattgattt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115 gacagcccccttcatggtgcattttaattttctttttgaaatcatgctcattattgattt 56

                                             
Query: 421 gtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgt 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 55  gtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgt 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)