XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAG
GTCTCAGTCACCTTGCTAATTCCAGAGAAAGGAGGCCAACAAAATTCTTC
TGCTTCTAGGGTGCCTTCTTTCACTTATGCCATACTGAATTGGTTTTTAT
GCTGGTCCACTGTGGACACTGGATGGGTTTTGTGTATTTCCAAGTAGAGA
TTCTGTTAAGTAGAGGAGTCTACTACCATGAACATCCACAGGTGGGGTGA
AGGCACTATGCACAAAGTCCTAGCTGGATCTCAGGTAGACTCCGAAGAGC
TCAAGGCGTAGCCCTGCAAGCTGCAAATAAAATGACCTAAAGAAAATCAG
GCCTGAGTCAGACAGATACTTGAATGTATTTCACCTCTAAAATCCAGTTT
TTAATGGGATGTGTATAGAAAAATCTGAAAGTCTTCAAAGAATGCAAACA
ACTATGCAAGCCAGTGTTCCTAAGAAGGAGGCAGATATTGGTCAGTCTGT
AGATGCTGAGTATTACAAGCATGGCTAACACAAACATGCTGGGATAAACA
TTCCCTTTAAGTTATTAGCACAATGAGCTCCTTATGAGGACAAGACTCAT
CAAATGAGCATCATCTCATCTGTTTTAAAGGAAATGTGAAAGGGCCTAGA
ATTGAGTTTTTGTTCCTATCAATGTCTTTGTATTTTAAAAGCAAATGTGA
CTTTTCTCCTATTTAACAAAATTTATCACATAAAAAAAN

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCATTTTTGTTGTCTTTATTG
CTTCTATTTCAATTTTTAGGTCATGACCAGTTTTCTTCATCTGCTTGTTG
GTTTCCTTGGCAGTCTTTAAGGAATTTATTGATTTCCTCCAATGTTTTGT
TTGTCTCTTCCTCAATTTCTTTAAGAGATTTCTTGTTTAAGGACATCTAC
TATCTCTATAATGTTAGTTTTAAGGTTGGTTTCTTGAGGTTCAGCTGCAT
TGAAATATATTCAGTCTTGCTTTCATAGGGTAGCTGGGCTCCAGAGATAC
TGTATCTCCCTGGCTGTTATTGCTTATATTTTTACACTGGAATTTATGCA
TCTGGATTTGATTATAGGTCTAGATGCTTATTTTTGAGGTTGTATTTGTT
GGATATGGTATTCTTTGGTTTCTCTTTTCTGTTTGGTCTTATGTTCCTTA
TGGCCTGAATTTCTGTCTGCCCAACTTGGCCTTTGATCAACTAAAGAGCC
TTTGACTAGGTTAGTGGCTAGACTTTGAATGACTAGCTTGGCCTTTGGTT
CAGGAGGGAAGGTGATGAAGTGGTAAGGGGGAGGCCCCTCCTTTCCCCCC
TTCTCTTTTCTTCCTTTCCCTTCTTCCTTCCTTTTCTCCCTTTCTCTTTT
CCTCTCCCCTTCCTTCTTTTTCTCN

Query= MSMg01no115_a18.b1 MSMg01no115_a18.b1 CHROMAT_FILE:
MSMg01no115_a18.b1 PHD_FILE: MSMg01no115_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:53 2005
         (628 letters)



>mm_chr11_25585514_25586541
          Length = 1028

 Score = 1114 bits (576), Expect = 0.0
 Identities = 612/624 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataggtctcagtcaccttgctaattccagagaaaggaggccaacaaaattcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gaattcataggtctcagtcaccttgctaattccagagaaaggaggccaacaaaattcttc 769

                                                                       
Query: 65  tgcttctagggtgccttctttcacttatgccatactgaattggtttttatgctggtccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 768 tgcttctagggtgccttctttcacttatgccatactgaattggtttttatgctggtccaa 709

                                                                       
Query: 125 tgtggacactggatgggttttgtgtatttccaagtagagattctgttaagtagaggagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtggacactggatgggttttgtgtatttccaagtagagattctgttaagtagaggagtc 649

                                                                       
Query: 185 tactaccatgaacatccacaggtggggtgaaggcactatgcacaaagtcctagctggatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tactaccatgaacatccacaggtggggtgaaggcactatgcacaaagtcctagctggatc 589

                                                                       
Query: 245 tcaggtagactccgaagagctcaaggcgtagccctgcaagctgcaaataaaatgacctaa 304
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct: 588 tcaggtagactccgaagagctcaagacttagccctgcaagctgcaaataaaatcacctaa 529

                                                                       
Query: 305 agaaaatcaggcctgagtcagacagatacttgaatgtatttcacctctaaaatccagttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agaaaatcaggcctgagtcagacagatacttgaatgtatttcacctctaaaatccagttt 469

                                                                       
Query: 365 ttaatgggatgtgtatagaaaaatctgaaagtcttcaaagaatgcaaacaactatgcaag 424
           ||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 468 ttagtgggatgtgtatagaaaattttgaaagtcttcaaagaatgcaaacaactatgcaag 409

                                                                       
Query: 425 ccagtgttcctaagaaggaggcagatattggtcagtctgtagatgctgagtattacaagc 484
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ccagtgttcctaaggagaaggcagatattggtcagtctgtagatgctgagtattacaagc 349

                                                                       
Query: 485 atggctaacacaaacatgctgggataaacattccctttaagttattagcacaatgagctc 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 348 atggctaacaccaacatgctgggataaacattccctttaagttattagcacaacgagctc 289

                                                                       
Query: 545 cttatgaggacaagactcatcaaatgagcatcatctcatctgttttaaaggaaatgtgaa 604
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttaagaggacaagactcatcaaatgagcatcatctcatctgttttaaaggaaatgtgaa 229

                                   
Query: 605 agggcctagaattgagtttttgtt 628
           ||||||||||||||||||||||||
Sbjct: 228 agggcctagaattgagtttttgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_a18.g1 MSMg01no115_a18.g1 CHROMAT_FILE:
MSMg01no115_a18.g1 PHD_FILE: MSMg01no115_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:53 2005
         (548 letters)



>mm_chr17_21154139_21155086
          Length = 948

 Score = 1027 bits (531), Expect = 0.0
 Identities = 543/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccatttttgttgtctttattgcttctatttcaatttttaggtcatgaccagttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccatttttgttgtctttattgcttctatttcaatttttaggtcatgaccagttttct 260

                                                                       
Query: 61  tcatctgcttgttggtttccttggcagtctttaaggaatttattgatttcctccaatgtt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctgcttgtttgtttccttggcagtctttaaggaatttattgatttcctccaatgtt 320

                                                                       
Query: 121 ttgtttgtctcttcctcaatttctttaagagatttcttgtttaaggacatctactatctc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttgtctcttcctcagtttctttaagagatttcttgtttaaggacatctactatctc 380

                                                                       
Query: 181 tataatgttagttttaaggttggtttcttgaggttcagctgcattgaaatatattcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataatgttagttttaaggttggtttcttgaggttcagctgcattgaaatatattcagtc 440

                                                                       
Query: 241 ttgctttcatagggtagctgggctccagagatactgtatctccctggctgttattgctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctttcatagggtagctgggctccagagatactgtatctccctggctgttattgctta 500

                                                                       
Query: 301 tatttttacactggaatttatgcatctggatttgattataggtctagatgcttatttttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttttacactggaatttatgcatctggatttgattataggtctagatgcttatttttg 560

                                                                       
Query: 361 aggttgtatttgttggatatggtattctttggtttctcttttctgtttggtcttatgttc 420
           |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 aggttgtatttgttggatgtggtattctttggtttctgttttctgtttggtcttatgttc 620

                                                                       
Query: 421 cttatggcctgaatttctgtctgcccaacttggcctttgatcaactaaagagcctttgac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttatggcctgaatttctgtctgcccaacttggcctttgatcaactaaagagcctttgac 680

                                                                       
Query: 481 taggttagtggctagactttgaatgactagcttggcctttggttcaggagggaaggtgat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taggttagtggctagactttgaatgactagcttggcctttggttcaggagggaaggtgat 740

                  
Query: 541 gaagtgg 547
           |||||||
Sbjct: 741 gaagtgg 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)