BAC Information

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BAC

Clone NameMSMg01-115N12
Chromosome17 (Build37)
Map Location 17,986,304 - 17,986,621
singlet/doubletsinglet
Overlap geneHas1
Upstream geneLOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik
Downstream geneFpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N12.T7 (MSMg01no115_n12.b1)MSMg01-115N12.TJ (MSMg01no115_n12.g1)
ACCAG327372AG327373
length825723
length of high quality
(start - end)
320 (46 - 365)577 (80 - 656)
definitionCHROMAT_FILE: MSMg01no115_n12.b1 PHD_FILE: MSMg01no115_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:54 2005CHROMAT_FILE: MSMg01no115_n12.g1 PHD_FILE: MSMg01no115_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCATGTACCACTGAATGAAAAAGAATCACATCAAAGGGAGAA
AGGACTCATAGCAAATGGATAGATATGATTGGCTAAATATCCACATTAAG
TCAATTCATCAGTAGTTGGTGAATGAATGAATGGATGAATGAATGAGAGT
CTGAACGTGTGATGACGAAAGAAGAAAAGTTTTAAAAGCCTGGCAGATAG
CTGTGCAGACAAGTGAGTGAGTGCTGTGCAAGCTTGAGGACCTAGATTTG
AATCCACAGCATCCGTGTAAAAGACTAGGTGTGGCTGCATATGCCTGCCT
GCAATATAATGCTGGGGGATGGCAATGGCAATTGGATTCCTCCTCTCTTT
TTTTCTTCTCCCTCCCCCCCCCTTCCTATCACTTTTTTTTCTCCCCCCCC
GCCCCCCCCCTTTCCCCCCTTCCCCCTACCCTTCTCCTTTTTTTTCTTAC
CCCTCCCCCTCATCTTCTCTTCTCTTTTTTCCCCCCTCGTTTCTCCCCTC
CCCCCCCTCCCTCTCACCCCCCCCCCTCTCCTCTTCCCCTTTTTCCCTCC
ACCCTCCTACCTCCCTTATTTTCTCCCGACCCCTCCTCCTTCATCTCTCC
TCCTCTTCCCTTACATCCCCCCCACCTCCACTCCCCCTTTTTCTTCCTCC
CCTTCTTTTTCCCCTCCCCTCTTTCCCCCCTCATACTCTCATCACCCTTC
GGCACACCTCCCCTTTCCCTCTCACTCTTCACCACACTTCTTCTCCCTCA
TTTACCTCGCCTCCCTCATCCTCTT
CCCCNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTACCTCTGTTCCCAA
TTTTTAATAGGGTTATTTGGTTCTCTGTAATCTAACTTCTTGAGTTTTTT
TTTATATATTGGATATTAACCTTCTATCAGATGTAGGGATGGTAAAGATC
TTTCCCCAATCTGTTGGTTGCTGTTATGTTATGGGACACAATGAAAGCAG
TGCTAAGAGGAAAACTCTGAATGTCTCCAAAAAGAAACTGGAGAGCGCAT
ACACTAGGAGCTTGACAGCAAAACTGAAAGTTCTAGAACTAAAAAAAGCA
AAGAGACCAAAGAGGAGGAAAAGGCAGGAAATAATCCAACTCAGGGCTGA
AAGCTACCAAGTAGAAACAAAAGAAACACACAAAGAATCAACCAATCCAG
GAGCTGGTTCTTTGAGATAATCAATAAGAGAAATAAACCCTTAGCCAAAG
TAACCAGAGGGCACAGAGTTAGTACCCAAATTAACAAAATCAGAAATGAA
AAGGGAGACACAGCAACGGAAACTGAGGAAATCCAAAACATTATCAGATC
CACTACAAAAGCCTATGCTCAACAAAACTGGAAAATCTAAACAAAATGGA
CAATTTTCTAGACAAATTCAAGGTACCAAAGTTTAATAAGGATCACATTA
ATGATGTTAACAGTCTCATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n12.b1 MSMg01no115_n12.b1 CHROMAT_FILE:
MSMg01no115_n12.b1 PHD_FILE: MSMg01no115_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:54 2005
         (320 letters)



>mm_chr17_17986100_17986819
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 315/318 (99%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgcatgtaccactgaatgaaaaagaatcacatcaaagggagaaaggactcat 264

                                                                       
Query: 65  agcaaatggatagatatgattggctaaatatccacattaagtcaattcatcagtagttgg 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 agcaaatggatagatatgattggctaaatatccacattaaatcaattcatcagtagttgg 324

                                                                       
Query: 125 tgaatgaatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaatgaatgaatggatgaatgaatgagagtctgaacgtgtgatgacgaaagaagaaaag 384

                                                                       
Query: 185 ttttaaaagcctggcagatagctgtgcagacaag--tgagtgagtgctgtgcaagcttga 242
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 385 ttttaaaagcctggcagatagctgtgcagacaagagtgagtgagtgctgtgcaagcttga 444

                                                                       
Query: 243 ggacctagatttgaatccacagcatccgtgtaaaagactaggtgtggctgcatatgcctg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggacctagatttgaatccacagcatccgtgtaaaagactaggtgtggctgcatatgcctg 504

                             
Query: 303 cctgcaatataatgctgg 320
           ||||||||||||||||||
Sbjct: 505 cctgcaatataatgctgg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)