BAC Information

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BAC

Clone NameMSMg01-116C02
Chromosome17 (Build37)
Map Location 80,127,401 - 80,127,913
singlet/doubletsinglet
Overlap genenone
Upstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1
Downstream geneEG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116C02.T7 (MSMg01no116_c02.b1)MSMg01-116C02.TJ (MSMg01no116_c02.g1)
ACCAG327587AG327588
length712712
length of high quality
(start - end)
644 (55 - 698)513 (82 - 594)
definitionCHROMAT_FILE: MSMg01no116_c02.b1 PHD_FILE: MSMg01no116_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:17 2005CHROMAT_FILE: MSMg01no116_c02.g1 PHD_FILE: MSMg01no116_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCCGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTGTTCACTTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGATGGTATCTTTTGCCTTGCAGAAACTTTG
CAGTTTCATGAGGTCCCATTTATCAATTCTCGATCTTACAGCGCAAGCCA
TTGCTGTTCTATTCAGGAATTTTTCCCCTATGCCCATATCCTCGAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGAT
CGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACGATTTG
TTGAAAATGCTGTCTTTCGTCCGCTGGATGGTTTTAGCTCCCTTGTCGAA
GATCAAGTGACCATAGGTGTGCGGGTTCATTTCTGGGTCTTCAATTCTAT
TCCATTTGTCTACTTGTCTGTCAGTATACCAGTACCATGCAGTTTTTATC
ACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGA
GTTTCTTTTATC
CTTTTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGAATGGAATTCGCTT
ACCGTCTCCCTGTTTATTTTCTCATGGAATTGGGGATGGGGGGTTGTGCC
AGAGCTTGTTTAGAGACGATCTTGCACCTTCAAGTGGATGAGGTTAGAAG
GGTTAGGATGTGAAAGCGGGCCTTGTGCCAGAAAGCCTGTGGGCAACAGA
GTTGCAAAGGATTGCGGGTCCACAGCTTCGAACGGGCATAGTTTTTGTGG
GGGAGGAGGCAGGTGTGCCAGACTTGAGCTGGTGAGAACAATACCGAGTT
GTCTCGGTCCTTACTGTCATACACAGATGGAGGTGGGTTGGGAGGGGTGC
AAGAGATCCCCGTGTACCGTGGGGACCATGCTCTGAAGACTGTGGTTGAC
TCAGTTTCCCACTTCCCCACCTCCCCTAAGTCTTGTCATGGCTCTGAGCC
CTCCAGAAGCCCGCCTACTCCAGGAGGGGAGTCCACTCTGTCTTCATGTT
CTCTCTAATGGGAGCAGTAACAAGGCCCATGCTGTGACAACAGCCTTTTC
TCTCAACAGGAGACGACTGCATTTGACCCACCAGTGGCTGTATTTCCACA
GCCAGCAATTTTCCCAGTTAGTACGGTCTGACCGGCCGGGGAGTTCTTGG
AACCTGTTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_c02.g1 MSMg01no116_c02.g1 CHROMAT_FILE:
MSMg01no116_c02.g1 PHD_FILE: MSMg01no116_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:18 2005
         (513 letters)



>mm_chr17_80127201_80128113
          Length = 913

 Score =  946 bits (489), Expect = 0.0
 Identities = 507/513 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggaatggaattcgcttaccgtctccctgtttattttctcatggaattggggatgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cttggaatggaattcgcttaccgtctccctgtttattttctcatggaattggggatgggg 654

                                                                       
Query: 61  ggttgtgccagagcttgtttagagacgatcttgcaccttcaagtggatgaggttagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggttgtgccagagcttgtttagagacgatcttgcaccttcaagtggatgaggttagaagg 594

                                                                       
Query: 121 gttaggatgtgaaagcgggccttgtgccagaaagcctgtgggcaacagagttgcaaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gttaggatgtgaaagcgggccttgtgccagaaagcctgtgggcaacagagttgcaaagga 534

                                                                       
Query: 181 ttgcgggtccacagcttcgaacgggcatagtttttgtgggggaggaggcaggtgtgccag 240
           |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 533 ttgccggtccacagcttcgaaggggcatagtttttgtgggggaggaggcaggtgtgccgg 474

                                                                       
Query: 241 acttgagctggtgagaacaataccgagttgtctcggtccttactgtcatacacagatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acttgagctggtgagaacaataccgagttgtctcggtccttactgtcatacacagatgga 414

                                                                       
Query: 301 ggtgggttgggaggggtgcaagagatccccgtgtaccgtggggaccatgctctgaagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggtgggttgggaggggtgcaagagatccccgtgtaccgtggggaccatgctctgaagact 354

                                                                       
Query: 361 gtggttgactcagtttcccacttccccacctcccctaagtcttgtcatggctctgagccc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 353 gtggttgactcagtttcccacttccccacctcccctaagtcttgtcgtggctctgagccc 294

                                                                       
Query: 421 tccagaagcccgcctactccaggaggggagtccactctgtcttcatgttctctctaatgg 480
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tccagaagtccgcctacaccaggaggggagtccactctgtcttcatgttctctctaatgg 234

                                            
Query: 481 gagcagtaacaaggcccatgctgtgacaacagc 513
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gagcagtaacaaggcccatgctgtgacaacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)