Query= MSMg01no116_l10.b1 MSMg01no116_l10.b1 CHROMAT_FILE:
MSMg01no116_l10.b1 PHD_FILE: MSMg01no116_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:02 2005
(531 letters)
>mm_chr17_81382279_81383209
Length = 931
Score = 965 bits (499), Expect = 0.0
Identities = 523/531 (98%)
Strand = Plus / Minus
Query: 1 tgctaattctacagatttctacagttattgctattctaaagtaaaacggtcaattcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgctaattctacagatttctacagttattgctattctaaagtaaaacggtcaattcgata 672
Query: 61 tgaaaaatcgattttttttccaattcagtaccaacatgagcgcttttggaaacaaagctg 120
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 671 tgaaaaatcgattttttttccaattcagtaccaacgtgagcacttttggaaacaaagctg 612
Query: 121 cttcctggcagagggctgtgtctgtctccattttccacacctgtcgatatatttcatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 611 cttcctggcagagggctgtgtctgtctccattttccacacctgtcgatacatttcatttg 552
Query: 181 gggattagaccagctacatggctgactccatggcttccccacctgcatctcttagaagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gggattagaccagctacatggctgactccatggcttccccacctgcatctcttagaagct 492
Query: 241 gcctcatgctggtgaagaggtacggaattgggaaaacaaaacaaaaaccagctttctcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcctcatgctggtgaagaggtacggaattgggaaaacaaaacaaaaaccagctttctcag 432
Query: 301 actcagagatggtttgcctagaacgacttctgcacttaaggcactgtgtgctcccttaaa 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 actcagagatggtttgcctagaacgacttctgcacttaagacactgtgtgctcccttaaa 372
Query: 361 ccactctaaacatccctgggactgattctctcctctgtgccttcatagtaccacgcagtc 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctactctaaacatccctgggactgattctctcctctgtgccttcatagtaccacgcagtc 312
Query: 421 ccccaggaggcagggctacaggaagagggcaatcgcctggccggtgctctgctggagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccccaggaggcagggctacaggaagagggcaatcgcctggccggtgctctgctggagtga 252
Query: 481 gacccgaggctagtggcacagacatcaccagacacacttcatatcccttgg 531
||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 251 gacccgaggctagcagcgcagacatcaccagacacacttcatatcccttgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_l10.g1 MSMg01no116_l10.g1 CHROMAT_FILE:
MSMg01no116_l10.g1 PHD_FILE: MSMg01no116_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:03 2005
(488 letters)
>mm_chr17_81222818_81223706
Length = 889
Score = 791 bits (409), Expect = 0.0
Identities = 469/489 (95%), Gaps = 1/489 (0%)
Strand = Plus / Plus
Query: 1 tagtcctgtgactaccatgccaagcatctgtatttttaatgcagatggcctattacaccc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtcctgtgaccaccatgccaagcatctgtatttttaatgcagatggcctattacaccc 260
Query: 61 tctggaggccttggtcattattgaaacttaggaatgaggaatgagaagctgtgttgggta 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tctggaggccttggtcattattgaaactgaggaatgaggaatgagaagctgtgttgggta 320
Query: 121 atatgtggaagatggtcatggcttaaaggcttgatccccaggggtcaatgccagaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtggaagatggtcatggcttaaaggcttgatccccaggggtcaatgccagaggtgt 380
Query: 181 tgaggattttcaggaagtccagttttatgagagaggctcaagttggtgggagttatgctt 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tgaggattttcaggaagtccagctttatgagagaggctcaagttggtgggagttgtgctt 440
Query: 241 ttgagaggtatgtgggacctagtggtgtgctcatatccctggtcctggcttgtgatacac 300
|||||||| | |||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct: 441 ttgagagggaggtgggacctagtggtgcgctcatatccctggtcttggcttgtgatatag 500
Query: 301 atcgtttgctttggatgtccttctgtcatgaaacgacatcattcc-agacatattgacat 359
|| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 atagtttgctttggatgtccttctgtcatgaaatgacatcattcccagacatattgacat 560
Query: 360 tattcacaagtcaatcaggccacctggccttagactggatcttagttatgtaaatacagt 419
|||||||||||||||| ||||||||| |||| ||||||||||||| |||||| |||||||
Sbjct: 561 tattcacaagtcaatcgggccacctgaccttggactggatcttagctatgtatatacagt 620
Query: 420 ggccttaactaggatgaaacaccaagcttaaagcaaattgggaaagaaagtatttatttg 479
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ggtcttaactaggatgaaacaccaagcttaaagcaaattgggaaagaaagtgtttatttg 680
Query: 480 acttataag 488
|||||||||
Sbjct: 681 acttataag 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
