BAC Information

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BAC

Clone NameMSMg01-117D03
Chromosome17 (Build37)
Map Location 46,059,350 - 46,059,827
singlet/doubletsinglet
Overlap genenone
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
Downstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D03.T7 (MSMg01no117_d03.b1)MSMg01-117D03.TJ (MSMg01no117_d03.g1)
ACCAG328389AG328390
length707703
length of high quality
(start - end)
94 (495 - 588)474 (201 - 674)
definitionCHROMAT_FILE: MSMg01no117_d03.b1 PHD_FILE: MSMg01no117_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:40 2005CHROMAT_FILE: MSMg01no117_d03.g1 PHD_FILE: MSMg01no117_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACGCAGTTTACCCCTTCTCAACAGTCTGTTTTACGGGAAC
ACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTG
AATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCG
CAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCACCGGTGATGGTAACC
GTCCCGGGTTTTCTCATCCCAGGATTTCTCGTCCCGGGTTTTCTCATCCC
GGATTTCGGCACCAACTCTTACACGCGTTCTCGCGACCGGCCAGGAAGAA
CGCAACAAACCAGAATCTTCTGCGGCAAAACTTTATTACTTACATCTTCA
GGAGCAAGAGTGCAAGAGTGCAAGAGCTCTATTGCTTACATCTTTAGGAG
CCAGAGCGCAAGAGCGCTAGAGTGCAAGAGAGCAAGAGCCCTAGCAAGAG
AGAGAATGGCGAAACCCCGTCCCTTTTTAAAGAGAATTATTCTCCGCCTA
GGACATATTACTCCCTGATTGGCTGCAGCCCATCGACTGAGTTGTCGTCA
CGCGGAAGGCAGAGCACATGAGGTGGAGAACTACCCTTGGCACATGAGCA
GATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGCAAC
GGTGAAT
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTGGTTGTATGGGTGCATGTGAT
GTCTGTGTGTGCTGTGTGAGAAGGCACACGAGAATCCACAGGGATCGAAG
GAGGGCATGGGACCCTCCCCCCTGGAGCTGGTGTGACAAGAGTGCTGGGG
ACAGAACCCAGGTCCTCTGCAAGGGCTGCAGGTGCTCTTAGCCTCTGAGT
CATCTCACCAGCTTGATGCGTGAAATGTTTTAAACCTCAAGGCCCTGTAC
CCAGCAGCCTGGTGTGTATAATAGATAAACAGAAGTGATAAGGTTATTAG
TGGGCACAGGGGGGGGCTGCTTTCCTATCTCTCTGGCTAAACAGGCTTTT
AAGCTGAGGTCGCCAATGGACACAAACATCCCCAGCTGTCCCCAGAGCCA
CCAGTGTCTCCAGGACTACCATAGCCCATTCACATCCAAAAGCATCAGCC
TACAGATCCCAGCTCCTACCACCAGTGATGCCCTGGACACTGATGTTTCT
TCCTGGGGAACCTCCTCCCTGGGGTTACTCATCCCAGCCCGAGGGTCACA
GGCTACCTTCCATGCTGTCTCCAGACCGGTTATGAGTCTTTAAACATATA
CCCAAAAGCTCATGGGGTTGGAGCTTGGTCACTGAACTGGCATGGCAGGT
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d03.g1 MSMg01no117_d03.g1 CHROMAT_FILE:
MSMg01no117_d03.g1 PHD_FILE: MSMg01no117_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:40 2005
         (474 letters)



>mm_chr17_46059150_46060027
          Length = 878

 Score =  882 bits (456), Expect = 0.0
 Identities = 471/478 (98%), Gaps = 4/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaacccaggtcctctgcaagggctgcaggtgctcttagcctctgagtcatctcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaacccaggtcctctgcaagggctgcaggtgctcttagcctctgagtcatctcacca 260

                                                                       
Query: 61  gcttgatgcgtgaaatgttttaaacctcaaggccctgtacccagcagcctggtgtgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgatgcgtgaaatgttttaaacctcaaggccctgtacccagcagcctggtgtgtata 320

                                                                       
Query: 121 atagataaacagaagtgataaggttattagtgggcacag----gggggggctgctttcct 176
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 321 atagataaacagaagtgataaggttattagtgggcacagtggggggggggctgctttcct 380

                                                                       
Query: 177 atctctctggctaaacaggcttttaagctgaggtcgccaatggacacaaacatccccagc 236
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atctctctggctaaacaggcttttaagctgaggtcgccaatggagacaaacatccccagc 440

                                                                       
Query: 237 tgtccccagagccaccagtgtctccaggactaccatagcccattcacatccaaaagcatc 296
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 441 tgtccccagagccaccagtgtctccaggtctaccatagcccattcacatccaacagcatc 500

                                                                       
Query: 297 agcctacagatcccagctcctaccaccagtgatgccctggacactgatgtttcttcctgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctacagatcccagctcctaccaccagtgatgccctggacactgatgtttcttcctgg 560

                                                                       
Query: 357 ggaacctcctccctggggttactcatcccagcccgagggtcacaggctaccttccatgct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaacctcctccctggggttactcatcccagcccgagggtcacaggctaccttccatgct 620

                                                                     
Query: 417 gtctccagaccggttatgagtctttaaacatatacccaaaagctcatggggttggagc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctccagaccggttatgagtctttaaacatatacccaaaagctcatggggttggagc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 878
Length adjustment: 10
Effective length of query: 464
Effective length of database: 868
Effective search space:   402752
Effective search space used:   402752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)