CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCAGATGACCAACACTCTTAGAAAAATGTCTGGATACAAAGTT
TTTTCAGAAATTTTAGTAGATCTCCTTTATACAAACAATAAACACAATGA
AAAAATTAGGTAAAAGGCACTTTTTGTTATAGCCACAAATAAGATAAAAC
ATCATGGTGTAACTCTAACCAAGTAAGTGAAATACCTATACAAAAAGAAC
TTCAAGCCTTTGAAGAAAGAAATTGAAGAAGATATCATAACTAAAGAAAT
TCTGGAGGTATGACCATCCCTTATTTTGAGCTGTACTACAGAGTAATAGT
AATAAAAACCACATGACATTGTCATAAAAACAAACAGGTTGATATATGTA
ATCAAATTGAAGACCCAGAACTAAACCTACACACCTATGGACACTTGATT
TTTGACAAAGAAGCCAAAAGTATACAATGGAAAAAAAGTGTCTTCAACAA
ACCATGCTGGTCTAACTGGTTGTCTGCAAGTAGAAGAATGCAAATAGATC
CATGTCTATTACCCTGCACAAAATTCAAGTCCAAGTGGTTCAAAGACTTC
TACTACATAAAACTAGATATACTGAACCTACCAGAAGACAAAATAGGGAA
TATCCTTGAATATCCAATTGACACAAGAGAAAACCTTCTGATCAGAACAC
CCATAG

NTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTATACATCTTTTCAGGTA
ATTATTTCCTTGGCAGAAGCTGCTAGGGCGATTCCAAGACACCCTGTTAG
CACATCTGCTGCCAATGGTGAGCTGTAGCAAGCAGCACATCTCCAGCAGC
AGAAAACTCCTGACTTTCTTCAAAGAACTCAAAGGAGCCACACTTCTAAG
CAAGTACTAGGACAAAAAATTTATAGGTATATTTAAATAGAAAACATTTT
AGAACTCAATTCATTGGCTTCCAGTTCCAGAATATGCTTATTTGAAGTAA
CATGATTCTGCTCTACTTATATGATAGAGAAATGTTAGATTTTAAGAAAA
CAATAACAGCTAGTTGAAAAGTACAAAGAGACCTATGCCTACGAGAAAAC
AGCCTGCCTTCCTCTTGGGCTTGAAAGCCATCTTATAGAAAAGACAAGCT
AGGTTTGTTCCTGTTTATACTTAAATCTCCATTTCTTCAGAATTGGGCTA
TGCCCTACTTGTAACATCAGGTACCAAGCTTGGCTCTGTACTGGCCTGTT
CTAAGAAATGGCAAGCATGCCTTTGTTTTAAGGTGTTGTTATAACAATCT
TGTTATGACCACCTTGTACCCAGGTCGTGTTTCAGGAGGCTGTTATGACC
AT

Query= MSMg01no117_f04.g1 MSMg01no117_f04.g1 CHROMAT_FILE:
MSMg01no117_f04.g1 PHD_FILE: MSMg01no117_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:50 2005
         (605 letters)



>mm_chr17_94637714_94638718
          Length = 1005

 Score = 1069 bits (553), Expect = 0.0
 Identities = 585/597 (97%), Gaps = 4/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ctatacatcttttcaggtaattatttccttggcagaagctgctagggcgattccaagaca 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 ctatacatcttttcaggtaattatttccttggcagaagctgctagggcaattccaagaca 264

                                                                       
Query: 65  ccctgttagcacatctgctgccaatggtgagctgtagcaagcagcacatctccagcagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccctgttagcacatctgctgccaatggtgagctgtagcaagcagcacatctccagcagca 324

                                                                       
Query: 125 gaaaactcctgactttcttcaaagaactcaaaggagccacacttctaagcaagtactagg 184
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagagtcctgactttcttcaaagaactcaaaggagccacacttctaagcaagtactagg 384

                                                                       
Query: 185 acaaaaaatttataggtatatttaaatagaaaacattttagaactcaattcattggcttc 244
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 acaaaaaatttatagatatatttaaataggaaacattttagaactcaattcattggcttc 444

                                                                       
Query: 245 cagttccagaatatgcttatttgaagtaacatgattctgctctacttatatgatagagaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 cagttccagaatatgcttatttgaagtaacacgattctgctctacttatatgatagagaa 504

                                                                       
Query: 305 atgttagattttaagaaaacaataacagctagttgaaaagtacaaagagacctatgccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttagattttaagaaaacaataacagctagttgaaaagtacaaagagacctatgccta 564

                                                                       
Query: 365 cgagaaaacagcctgccttcctcttgggcttgaaagccatcttatagaaaagacaagcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgagaaaacagcctgccttcctcttgggcttgaaagccatcttatagaaaagacaagcta 624

                                                                       
Query: 425 ggtttgttcctgtttatacttaaatctccatttcttcagaattgggctatgccctacttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtttgttcctgtttatacttaaatctccatttcttcagaattgggctatgccctacttg 684

                                                                       
Query: 485 taacatcaggtaccaagcttggctctgtactggcctgttctaagaaatggcaagcatgcc 544
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 685 taacatcaggtaccaagcttggctctgtactg-cctgttctaagacatggcaagcatgcc 743

                                                                    
Query: 545 tttgttttaaggtgttgttataacaatcttgttatgaccaccttgtacccaggtcgt 601
           ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttgtttcaaggtgtt---ataacaatcttgttatgaccaccttgtacccaggtcgt 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)