Query= MSMg01no117_l08.b1 MSMg01no117_l08.b1 CHROMAT_FILE:
MSMg01no117_l08.b1 PHD_FILE: MSMg01no117_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:21 2005
(656 letters)
>mm_chr17_92310707_92311762
Length = 1056
Score = 1069 bits (553), Expect = 0.0
Identities = 632/693 (91%), Gaps = 56/693 (8%)
Strand = Plus / Minus
Query: 6 gaattcaaactgaatcaattcaagagactagattccaaagaactgcttccagggagtcaa 65
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 gaattcaaactgaataaattcaagagactagattccaaagaattgcttccagggagtcaa 626
Query: 66 aaggcctgagtatagggtctagtaggaaaagcacacccacatgtaaatatatgcccacag 125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaggcctgagtatagtgtctagtaggaaaagcacacccacatgtaaatatatgcccacag 566
Query: 126 acacacacacacacacacacacacacacacacacactcatctatacattttcatgtagac 185
||| | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 aca-------a-acacacacacacacacacacacactcatctatacattttcatatagac 514
Query: 186 atacacatgcatatacaaattcacaagcatgatgtaaaattggaatgtagacatatgggg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atacacatgcatatacaaattcacaagcatgatgtaaaattggaatgtagacatatgggg 454
Query: 246 tattataatgtagttaatagtgctgattatgttttatgacatttaaaatatctattattg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tattataatgtagttaatagtgctgattatgttttatgacatttaaaatatctattattg 394
Query: 306 caagaagtgatagggaataaagaagatagg------------------------------ 335
||||||||||||||||||||||||||||||
Sbjct: 393 caagaagtgatagggaataaagaagataggaagttgtattgagcagtttttatcaagaat 334
Query: 336 -----------------aactctcggcattgagtatgtatcaaggaatgctttatgaata 378
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agttactacgtactcaaaactctcggcattgagtatgtatcaaggaatgctttatgaata 274
Query: 379 ctaatcatgggtaaactacgaacaagtgcctgaacaaaatggaaggtttggatcatttgc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctaatcatgggtaaactacgaacaagtgcctgaacaaaatggaaggtttggatcatttgc 214
Query: 439 gcagacattcaaattttataaatcattttatgatgaagtaatgacgaaaagctttctaaa 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gcagacattcaaattttataaatcattttatgatgaagtaatgacgaaaagctttctaaa 154
Query: 499 gagctaatataaaataatactgaatgtgttcttaagcatctttcccatctatgattcatt 558
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 153 gagctaatataaaataatactgaatgttttcttaagcatctttcccatctatgattcatt 94
Query: 559 ccatacaaaatgcatctaaggagatatgtaagtcaagtatgtcctttttcatctaatccc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ccatacaaaatgcatctaaggagatatgtaagtcaagtatgtcctttttcatctaatccc 34
Query: 619 ctttgtcaatgatatcac-ttttttaggtattt 650
|||||||||||||||||| ||||||||||||||
Sbjct: 33 ctttgtcaatgatatcactttttttaggtattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_l08.g1 MSMg01no117_l08.g1 CHROMAT_FILE:
MSMg01no117_l08.g1 PHD_FILE: MSMg01no117_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:21 2005
(619 letters)
>mm_chr17_92223481_92224499
Length = 1019
Score = 1158 bits (599), Expect = 0.0
Identities = 614/619 (99%)
Strand = Plus / Plus
Query: 1 acttctgcaatagcaatactggttcatttacagctatagcaccatcacaaagtgattttg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 acttctgcaatagcaatactggttcatttacagctacagcaccatcacaaagtgattttg 260
Query: 61 tcttaaactttcatgctttaatattgtggcagtctgagttacaattcagaatgagtggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaactttcatgctttaatattgtggcagtctgagttacaattcagaatgagtggag 320
Query: 121 aaggaacaaacattagaaccccagggtatctttttaaaatatcacaaagttcaaatacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggaacaaacattagaaccccagggtatctttttaaaatatcacaaagttcaaatacat 380
Query: 181 actttctttccttattccattcatttgtctttccttgtatcaaagatacattatccagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttctttccttattccattcatttgtctttccttgtatcaaagatacattatccagta 440
Query: 241 cctacttcttcttctataaagataaaccaaagtacgaggcatatagctatatttttaggt 300
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 441 cctacttcttcttctataaagataaaccaaaataccaggcatatagctatatttttaggt 500
Query: 301 gactgaattttctgaaactctgggacttagtaggatagaacatggaatattttaagattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgaattttctgaaactctgggacttagtaggatagaacatggaatattttaagattc 560
Query: 361 caggaagtagataatgactctgctgtgcaggaatggaagctgaagaaagcctcaaaaaac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 caggaagtagataatgactctgctgtgcaggaatggaagctgaagaaagcctcacaaaac 620
Query: 421 tctcagtgtggatggacagaactacagtgtatttgtgtatttttcacatctggcccaggt 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tctcagtgtggatggacagaactacagtgtatttgtgtattcttcacatctggcccaggt 680
Query: 481 tcacttagatgacctaaaatctgcacagcagtcatacatgattggagaaagagtttataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacttagatgacctaaaatctgcacagcagtcatacatgattggagaaagagtttataa 740
Query: 541 cagtttccaaaaacacaaagatttcagaagccaggatcaaactggagaatgaggcaactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagtttccaaaaacacaaagatttcagaagccaggatcaaactggagaatgaggcaactt 800
Query: 601 cttgttatgcattatgtgt 619
|||||||||||||||||||
Sbjct: 801 cttgttatgcattatgtgt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
