BAC Information

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BAC

Clone NameMSMg01-118I22
Chromosome17 (Build37)
Map Location 92,265,291 - 92,265,754
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235, LOC100043741, LOC100043742
Downstream geneEG640442, LOC627395, LOC676141, LOC668877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118I22.T7 (MSMg01no118_i22.b1)MSMg01-118I22.TJ (MSMg01no118_i22.g1)
ACCAG329398AG329399
length704704
length of high quality
(start - end)
591 (43 - 633)467 (75 - 541)
definitionCHROMAT_FILE: MSMg01no118_i22.b1 PHD_FILE: MSMg01no118_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:27 2005CHROMAT_FILE: MSMg01no118_i22.g1 PHD_FILE: MSMg01no118_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATACTGCACTCCCATCAATGGACAAACCATGGAAACAGAAAGTAAAC
AGTGAAACTAACAAGAAGTTATGAACCAAATGGTTCTAACAGATATTTAT
AGAACATTTAACCTTAAAACAATAGAATATAGCTTCTTCTCAGCACCTCA
TGGTACCTTTTCTAAAAGTGACCATACAATTTATCAGGCAACAGGCCTCA
ACAGATACTAGAAGATTGAAATAATCCTATGCACCCTATCAGATCACCAG
GAACTAATAAAGTTTGTCTTATATACCTACAACAACAATGGAAAGCACAC
ACACACATGGAAGCTGATCAACACTCTACCCAATGATACATTGGTCAAGG
AAGAAATAATTAAAGAAATTAAAGGCTTTTAAGGATTTAATAAAAATGAA
GACACATCATACATATACCTATGGGACACAATGAAAGCAGTAGAAATAGG
AAAACCCATATCTCTAAGTACCTCCAAAAAGGGAACTGGAGAGAACCTCT
CTCCATATAAGACAGTGCTTGTTAGTGATGTCATAATAATTACTTTATTA
CAAGCTTGCATTTATTCTAATGTGTGTTCTTTCAGAACTATTTGTGATAT
TCATAAAGTTCTTTATTAAAGAAATATAAAATGGAGAAAAGTTAAAGGGA
AATA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTATATATGTATCCTATTTTAAA
ATTGATTTCTTTTCTTGATGTTTACTTCTTTTCATTTAAAAATTTAATAG
CTAGAAGGAATATCTATCCTCACAAAATCGATTATTTGTGGAAAAAATGC
CTAGAGATTGATACAATAGGATTACCATATTTTTGTTATTATTTGGTTAT
GATATCAGGCATATCAATATTTTGATTAAAATTTAAAAATCAATGTAAAG
TTGAAGCTGTTCAACATATGATAATCTATTTAATGATATTGATAGTAAGA
AAAATAGATATGGGTTATATGAAAATTCTCTTCACAACTTTAATGTAAAT
TCTAAACTATTATAAAAATAGTTGATTGTGAAACAAGTAAATGAAAGTAT
AATACACATATCACATTAATATAACAAAAATTAATGATAATCAACATATG
TTATATTGTTAATAAATATTGCACACACACACACACACTCACACACACAC
ACACATATATATATATATATATATATACTCAATATTTCCAATGTTATTAT
TTTTCACAGAAACATATGCTTTATAAAAAGTACTTGTTTTATAAATTGGT
AGAGATTATTCTCATTAGGGGAGTGATACCACCTTGAGTCTTAACTATCA
TAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_i22.g1 MSMg01no118_i22.g1 CHROMAT_FILE:
MSMg01no118_i22.g1 PHD_FILE: MSMg01no118_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:27 2005
         (467 letters)



>mm_chr17_92265091_92265957
          Length = 867

 Score =  797 bits (412), Expect = 0.0
 Identities = 451/464 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttatatatgtatcctattttaaaattgatttcttttcttgatgtttacttcttttca 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 201 agtttagatatgtatcctattttaaaattgatttcttttcttgatgtttagtttttttca 260

                                                                       
Query: 61  tttaaaaatttaatagctagaaggaatatctatcctcacaaaatcgattatttgtggaaa 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tttaaaagtttaatagctagaaggaatatctatcctcacaaaatcgattatttatggaaa 320

                                                                       
Query: 121 aaatgcctagagattgatacaataggattaccatatttttgttattatttggttatgata 180
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 321 aaatgcctagagattgatacaatgggattaccatatttttgttactatttggttatgata 380

                                                                       
Query: 181 tcaggcatatcaatattttgattaaaatttaaaaatcaatgtaaagttgaagctgttcaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggcatatcagtattttgattaaaatttaaaaatcaatgtaaagttgaagctgttcaa 440

                                                                       
Query: 241 catatgataatctatttaatgatattgatagtaagaaaaatagatatgggttatatgaaa 300
           |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 441 catatgataatctacttaatgatattgatagtaggaaaaatagatatgtgttatatgaaa 500

                                                                       
Query: 301 attctcttcacaactttaatgtaaattctaaactattataaaaatagttgattgtgaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attctcttcacaactttaatgtaaattctaaactattataaaaatagttgattgtgaaac 560

                                                                       
Query: 361 aagtaaatgaaagtataatacacatatcacattaatataacaaaaattaatgataatcaa 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 561 aagtaaatgaaagtataatacacatatcacattaatataacacaaattaatgataatcag 620

                                                       
Query: 421 catatgttatattgttaataaatattgcacacacacacacacac 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatgttatattgttaataaatattgcacacacacacacacac 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)