BAC Information

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BAC

Clone NameMSMg01-119F03
Chromosome17 (Build37)
Map Location 49,818,286 - 49,912,527
singlet/doubletdoublet
Overlap geneKif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F03.T7 (MSMg01no119_f03.b1)MSMg01-119F03.TJ (MSMg01no119_f03.g1)
ACCAG329969AG329970
length704712
length of high quality
(start - end)
362 (42 - 403)419 (74 - 492)
definitionCHROMAT_FILE: MSMg01no119_f03.b1 PHD_FILE: MSMg01no119_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:26 2005CHROMAT_FILE: MSMg01no119_f03.g1 PHD_FILE: MSMg01no119_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,912,169 - 49,912,527)(49,818,286 - 49,818,704)
sequence
CAAAATTTGCGCCGCTAAACGACTACTATATCCAGAAATGCGCGGAATTC
AATCTCTTTGCCCCATTTCTCTTCCGCCATTTTACTTCCCCAGCCCCAGC
GGCCTTTCCACTTCCTGTCACGTGTCCTTTTGCCCGCTCTCCTTTCTCAC
CACTTCTTGTTCTCCCTTCATGCTCTCCTGTCTGGCTTCATAGTCAATGC
CCACTCTCACACCTTCATTACACACACAACCATTAAAAGTTAACACCTGT
ACTTCCAGCACGAGAACACATTTCACTTCTGGAGCCTGGTTCACCTCACT
TAATATAATACTTCCCAGATCCACTCATGTTTCCAAAAATCTCATCATTT
CTTTTTCTTACAGGCTCACCACTTTCTATTAACACACACTTGAGACTTGC
AGAAGCCCCGGGAGGAGCTAAATCACTTCCCATTCTTCCTGGGCATGACA
GGGTCTAGACCCCTGACAAGTAAAGTTAAGAGAAAATTTCAAGCTACAAA
ATGGTGATGGAAGATATTAATCCATTTTTGGCAGGTAATCTTTATGGAGA
AGTTGCCCCACTGTGTTTAGTGTCTAATGTCAACAAGGAGTCACTTAACT
ATTAACCTTTTCATTTCAAATCATAATGATAACTATACATGCACTAACTT
GTTTACCCACCTCAAATGAGCCAAGGCCTGACTCACTACACATTTTGCCT
TGTT
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCATTTTCTATTTCTTTATACAGAA
TAGGCATTGGATCAAGTACCACTTATCAGTCTTCTAGTGTCTAATATCTA
GAGTTCAAGGACTGATGACGTTCACTGTGAAATTTTCTTCGTGATTTTTC
TCCATTTCACACAAGAACAGTAATATGAATGTTTTCTAATGTTCCACACC
TGGAAAAGAATAAGGACAGTGATTGCATTCTCAGTGAGTTCTCTGCATCC
GTTACCATGCATTCTTCCTGTGTCCTCTGCATCCATGATCATGCATTCTC
CATGTCTCCTCTGCATCCATGATCATGCATTCTTTCTGTGTCCCGTGCAT
CCATGATCATGCATTCTTCCTGTGTCCTCTGTGTCCATGATCATGTATTC
TTCCTGTGTCCTCTGCATCTGTGGTGATCATGCATTCTTCCTGTGTCCTG
TGCATCCATGATCATGCATTCTTCCTGTGTCTTCTGCATCCATGACCATT
GCATTCTTCCTGTGTCCCCCTGCATCCATGATTATGTATGCTCCATGTTT
CCTGCGTTTCTGTGACCATGCATCCTTCTTATGCCCCGTGCATCCACGAT
CATGCATTCTTCCTGTTACCTTTACCATTCTTGATATTAACGAAGCTTTC
CCCAGTCTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f03.b1 MSMg01no119_f03.b1 CHROMAT_FILE:
MSMg01no119_f03.b1 PHD_FILE: MSMg01no119_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
         (362 letters)



>mm_chr17_49911966_49912727
          Length = 762

 Score =  632 bits (327), Expect = 0.0
 Identities = 351/359 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaatctctttgccccatttctcttccgccattttacttccccagccccagcggcc 63
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaattcaatctctttgtggcatttctcttccgccattttacttccccagccccagcggcc 503

                                                                       
Query: 64  tttccacttcctgtcacgtgtccttttgcccgctctcctttctcaccacttcttgttctc 123
           |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct: 502 tttccacttcctgtcacgtgtccttttgtccgctcccctttttcaccacttcttgttctc 443

                                                                       
Query: 124 ccttcatgctctcctgtctggcttcatagtcaatgcccactctcacaccttcattacaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccttcatgctctcctgtctggcttcatagtcaatgcccactctcacaccttcattacaca 383

                                                                       
Query: 184 cacaaccattaaaagttaacacctgtacttccagcacgagaacacatttcacttctggag 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 cacaaccattaaaagttaacacctgtacttccagcacgagaacgcatttcacttctggag 323

                                                                       
Query: 244 cctggttcacctcacttaatataatacttcccagatccactcatgtttccaaaaatctca 303
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgggtcacctcacttaatataatacttcccagatccactcatgtttccaaaaatctca 263

                                                                      
Query: 304 tcatttctttttcttacaggctcaccactttctattaacacacacttgagacttgcaga 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcatttctttttcttacaggctcaccactttctattaacacacacttgagacttgcaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no119_f03.g1 MSMg01no119_f03.g1 CHROMAT_FILE:
MSMg01no119_f03.g1 PHD_FILE: MSMg01no119_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:26 2005
         (419 letters)



>mm_chr17_49818188_49819009
          Length = 822

 Score =  772 bits (399), Expect = 0.0
 Identities = 414/419 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcattttctatttctttatacagaataggcattggatcaagtaccacttatcagtctt 60
           |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct: 99  tttcattttctatttctttatagagtataggcattggatcaagtaccatttatcagtctt 158

                                                                       
Query: 61  ctagtgtctaatatctagagttcaaggactgatgacgttcactgtgaaattttcttcgtg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctagtgtctaacatctagagttcaaggactgatgacgttcactgtgaaattttcttcgtg 218

                                                                       
Query: 121 atttttctccatttcacacaagaacagtaatatgaatgttttctaatgttccacacctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atttttctccatttcacacaagaacagtaatatgaatgttttctaatgttccacacctgg 278

                                                                       
Query: 181 aaaagaataaggacagtgattgcattctcagtgagttctctgcatccgttaccatgcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaagaataaggacagtgattgcattctcagtgagttctctgcatccgttaccatgcatt 338

                                                                       
Query: 241 cttcctgtgtcctctgcatccatgatcatgcattctccatgtctcctctgcatccatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cttcctgtgtcctctgcatccatgatcatgcattctccatgtctcctctgcatccatgat 398

                                                                       
Query: 301 catgcattctttctgtgtcccgtgcatccatgatcatgcattcttcctgtgtcctctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 catgcattctttctgtgtcccgtgcatccatgatcatgcattcttcctgtgtcctctgtg 458

                                                                      
Query: 361 tccatgatcatgtattcttcctgtgtcctctgcatctgtggtgatcatgcattcttcct 419
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tccatgatcatgcattcttcctgtgtcctctgcatctgtggtgatcatgcattcttcct 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 822
Length adjustment: 9
Effective length of query: 410
Effective length of database: 813
Effective search space:   333330
Effective search space used:   333330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)