BAC Information

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BAC

Clone NameMSMg01-120G12
Chromosome17 (Build37)
Map Location 60,227,421 - 60,227,934
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120G12.T7 (MSMg01no120_g12.b1)MSMg01-120G12.TJ (MSMg01no120_g12.g1)
ACCAG330783AG330784
length690774
length of high quality
(start - end)
515 (22 - 536)---
definitionCHROMAT_FILE: MSMg01no120_g12.b1 PHD_FILE: MSMg01no120_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005CHROMAT_FILE: MSMg01no120_g12.g1 PHD_FILE: MSMg01no120_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTACTATTTCGAGAGGACCGCGGAATTCAATAACTATTCGGTAAAAGA
AACCAACTGAGAGAAGATTCTATTGGTCCATATTCTAGCCTTGCTTACAA
AAGAACTGCCTAGAATAGTGCCAATAGCAGAAAGAAACACATGACCTCAG
TCTATTAAATTCTATTCTGCCTAATATTTTATAACTAGCATCAGTGAATT
AATCTATAAATCTCCCTTGGTAATTAACAGCTCCTAACAGTGTGGGCTAT
GGTCTTACACTATCGTGGTTCGGACTTTTGCAGGGCATAGGTTGACACTG
TGACTCACCTTGGAATCTAGAGCTAGTCTATCCTCTATTATAACCAGTCC
TGAGCATAATCTACCATATTCTAACCTAGGCTATTTTACCTAGAAGGTAT
ATGAGTCTATAACCACCACAAAGAAGAAACAGGAAAAACTACCCTTTCTA
GGTACCCCCTGTTTCATTCTGAAAAATAAATGCAAATTTCTAAAAAGTAT
TAATTGGGATTGGCCTTTTGTGCCAAAACTATGACCAGGCCACTATATGC
TTGAAGGGCTGGATTTGCGTGACATTCAATATGAAACGATAGAAATGACG
TGATACTTAAAATTAAAATAATCAATAAGTTTACAATTTCTGCGAAATAA
GCTTAAGACTGCTATATTATAAATCATAGGATGAACATTC
TTTTATATATTAAATACTTTCTNCCCCTTTCAACAAACCCCCTTTCNCAA
ANAATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNCACCCGAG
GNGAACNANAGAAGTTGGCAACACCACGANAGNNGNGNAGNCGAAAAGGC
AGGAGGACACAGCAGCCCANCCCCGCAAGACAGCACCAGAAAGAAGGAGA
CCCCAAGACCAGCGAAGCAAGGGCNCAAAAGCAGGAAAAACAAACACGCC
AGCGAGAACAAGAACAAANACGCAAAAGGCAAAGGCGCCNNCCCGCAAGA
GCCCCTATAAACGAACCCCAAGGAGAGGGCCGACCACCACCCAGAACGAA
AGCGGGNCNNGCCACGNCACATTTTTTTTTCAAGACAAANCCCCCCCAAG
AACGCCCAGCTGGATGGCCCCCACCCCCCCCCAGAAGAAGGCGAGCNAAC
AACCAAGAAGAGCCCCCACAGGGAAAAAATCAACAGGCCGACAACGCGAA
CTACAGAAAGGAGCACAACTCACACGGACAGACGCTCAGGGAGAAAAACT
AGGCTGGCACCCAAGACCTATCATTCAGGGATGATACAAAATACGCCGGG
ATTGAAAATGAAAGGAATGTGTGCCATCCCATCCGAAATCTTTATTCCTT
CTACCCTGAAGAGAACATATGATTTTCCCTTCCTTATATCCCGACCAGAG
TTAGGTAAGTGTTTCTTTTTTTCTCTGCAAAAAACGAATAAAAAATGTTA
TCTTTCATTATAAACTGTGGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_g12.b1 MSMg01no120_g12.b1 CHROMAT_FILE:
MSMg01no120_g12.b1 PHD_FILE: MSMg01no120_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:49 2005
         (515 letters)



>mm_chr17_60227219_60228134
          Length = 916

 Score =  955 bits (494), Expect = 0.0
 Identities = 509/514 (99%), Gaps = 1/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcaataactattcggtaaaagaaa-ccaactgagagaagattctattggtccata 61
           ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 716 ggaattcaataactagtgggtaaaagaaacccaactgagagaagattctattggtccata 657

                                                                       
Query: 62  ttctagccttgcttacaaaagaactgcctagaatagtgccaatagcagaaagaaacacat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttctagccttgcttacaaaagaactgcctagaatagtgccaatagcagaaagaaacacat 597

                                                                       
Query: 122 gacctcagtctattaaattctattctgcctaatattttataactagcatcagtgaattaa 181
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 596 gacctcagtctattaaattctattctgcctaatattttgtaactagtatcagtgaattaa 537

                                                                       
Query: 182 tctataaatctcccttggtaattaacagctcctaacagtgtgggctatggtcttacacta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctataaatctcccttggtaattaacagctcctaacagtgtgggctatggtcttacacta 477

                                                                       
Query: 242 tcgtggttcggacttttgcagggcataggttgacactgtgactcaccttggaatctagag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcgtggttcggacttttgcagggcataggttgacactgtgactcaccttggaatctagag 417

                                                                       
Query: 302 ctagtctatcctctattataaccagtcctgagcataatctaccatattctaacctaggct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctagtctatcctctattataaccagtcctgagcataatctaccatattctaacctaggct 357

                                                                       
Query: 362 attttacctagaaggtatatgagtctataaccaccacaaagaagaaacaggaaaaactac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attttacctagaaggtatatgagtctataaccaccacaaagaagaaacaggaaaaactac 297

                                                                       
Query: 422 cctttctaggtaccccctgtttcattctgaaaaataaatgcaaatttctaaaaagtatta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cctttctaggtaccccctgtttcattctgaaaaataaatgcaaatttctaaaaagtatta 237

                                             
Query: 482 attgggattggccttttgtgccaaaactatgacc 515
           ||||||||||||||||||||||||||||||||||
Sbjct: 236 attgggattggccttttgtgccaaaactatgacc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)