BAC Information

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BAC

Clone NameMSMg01-120L14
Chromosome17 (Build37)
Map Location 62,503,438 - 62,503,606
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620725, LOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L14.T7 (MSMg01no120_l14.b1)MSMg01-120L14.TJ (MSMg01no120_l14.g1)
ACCAG331020AG331021
length755786
length of high quality
(start - end)
244 (72 - 315)169 (135 - 303)
definitionCHROMAT_FILE: MSMg01no120_l14.b1 PHD_FILE: MSMg01no120_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:16 2005CHROMAT_FILE: MSMg01no120_l14.g1 PHD_FILE: MSMg01no120_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCCGGACCGCGGA
ATTCATTTTTGCTAAAAATGATTTCAGAGCTGACTTCCTTCGAGTGGATA
ACCAAATAGGGAGTTTTTCTCTGGGAGACATTAATTTTCCCTATCTGAAC
AGTCATCAGCTGCCTGTAGTTCTTTTGGTAAAGGTGGGACTTTATTTAAA
AAATTCCCCATTGTATTAGCATTTCTGTTGACGTCATTATTCAGCATAGC
TTTTGGTAATACTCCTGTTCTTCCTTTTTGGAATAAGAAGTATATAATTT
GCTTTGTATTTTATAGGTTTCTTTAGTTAAGAGACTTCGAATGGGTCTTG
CAAACTTTATATGCCCCAGTACAGGGGAACACCCGGGCCAAGAATTGGGA
GTGGGTGAGTAGGGGAGCAGTGTGTGTGGGGGAGGGTATAAGGCTCTTCC
CCCCCCCTTTCTTTCTTTTCTTTTCTCATCCCTCTATCCTAAACATCCAC
ATCCCCCCTTTTTTCCTATTTTTCTCTTTTTTATTTGCCTCTCTCCCTAT
TTTTTTCTTTTCCTTTTCCGCGCCGTTTCTCTCCTCTCTCATCACCCTTG
TTCCCATTACACCCCAAATTTTTCCCTTCCTTATTCTTCCCTCTTCTCCG
CCCACCATGTACATAACACGTCCAACCGGTACTTCTCTTTTTTTTTTCGT
ATGACAAAATACCCCGTCTTACCATCACTATTCTCCCCCCCTCTTCTTAC
CTCCN
TTTTTNCTAATCACCCCGTTCCTCTTTACTCCTTCTCCGCCCCCAAACAT
AATTCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCAGACATAGATTTAAAAATACAG
GTTAATAACATTTTCTCTACTTATGTATTCAAAGCAATAATGTCTAGCAG
CTCATAAGTCCAGCGTTTCCCGTGTCATCGTACCAATACAGGTAAAACTA
TAACCAAAGTCCTTTTTTCCCATTATTACCATTTGCAGATCAAGAATTTG
ATACCAAACAAACAAACAAACAAAAACCTATTGCACTTTCAACAAACTTC
AATGATTAATTAAAAGTCTAATATTCATTTTTATAAGGATAAAAAATTGG
CATTAGTTGTACCAAACGGACATTATAATTATCTATCTCAATATAGGCTG
TTTATGACTTGTCAAGTTACAGTAACAAGGAGGGATGTATGCTTTTCACA
TAATGTCACAGGTATCTCAATGTTAGAATATGCGTAAAAATGATATCACC
AGGCCTGAAAAACTTATTTTACAATAAAGTATTATTCCACCTCCACCAGA
GCAAAGAATTTCGTACCTGACAAACACCCTACCCTTGTGCATAAATTTTA
AACTATTTTTTCCCTACTAATTACCCCTTTATCTTTGTACAATATATCAT
ATTGAAACACTTCTCTTTATCAGCTATACCTTTAGCACGCCCCCCTTTTT
GCTATTTTTATCCCCCCATCCCTCTACCTATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l14.g1 MSMg01no120_l14.g1 CHROMAT_FILE:
MSMg01no120_l14.g1 PHD_FILE: MSMg01no120_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:16 2005
         (169 letters)



>mm_chr17_62503238_62503806
          Length = 569

 Score =  304 bits (157), Expect = 2e-87
 Identities = 166/169 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatttaaaaatacaggttaataacattttctctacttatgtattcaaagcaataatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatttaaaaatacaggttaataacattttctctacttatgtattcaaagcaataatgtc 260

                                                                       
Query: 61  tagcagctcataagtccagcgtttcccgtgtcatcgtaccaatacaggtaaaactataac 120
           ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtagctcataagtccagtgtttcccgtgtcatcgtaccaatacaggtaaaactataac 320

                                                            
Query: 121 caaagtccttttttcccattattaccatttgcagatcaagaatttgata 169
           ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagtcctttttccccattattaccatttgcagatcaagaatttgata 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)