Query= MSMg01no122_l12.b1 MSMg01no122_l12.b1 CHROMAT_FILE:
MSMg01no122_l12.b1 PHD_FILE: MSMg01no122_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:30 2005
(684 letters)
>mm_chr17_17632124_17633209
Length = 1086
Score = 528 bits (273), Expect = e-154
Identities = 295/303 (97%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 384 tctttgtaccttgcgggtgtgtcacccaacttccctattttcttcagcataaaaagtttg 443
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 1086 tctttgtaccttgcgggtgtgtcacccaacttccctattttcttctgtataaaaagtttg 1027
Query: 444 atgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtct 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 gtgctcgatttgacaaattacattcagattctacacaacctctcctgtgtgcatctgtct 967
Query: 504 gtcattccatccaacgctttgcccacctgcgactagagacccattccacgcagacaaagc 563
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 gtcattccatccaacactttgcccacctgcgactagagacccattccacgcagacaaagg 907
Query: 564 ggcccagagggtctgcagcaaactatcactttcaatggaagcatcttcaaaaagttaaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ggcccagagggtctgcagcaaactatcactttcaatggaagcatcttcaaaaagttaaat 847
Query: 624 gtg--aaaaaaaatggccatgaattcctgaggggtaagccccaggaacactaaggaacta 681
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 846 gtgaaaaaaaaaatggccatgaattcctgaggggcaagccccaggaacactaaggaacta 787
Query: 682 agg 684
|||
Sbjct: 786 agg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1086
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1076
Effective search space: 725224
Effective search space used: 725224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_l12.g1 MSMg01no122_l12.g1 CHROMAT_FILE:
MSMg01no122_l12.g1 PHD_FILE: MSMg01no122_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:30 2005
(760 letters)
>mm_chr17_17486354_17487513
Length = 1160
Score = 1439 bits (744), Expect = 0.0
Identities = 756/760 (99%)
Strand = Plus / Plus
Query: 1 aacaaaacaaaaacaaaaacaaaaacacaacatcaaaaacaaaccaagaaacaaacaaac 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 201 aacaaaacaaaaacaaaaacaaaaacacaataacaaaaacaaaccaagaaacaaacaaac 260
Query: 61 aacaaaaaaacccaaaaaccctaattaactaattcaagactacagaccaaataaaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaaaaacccaaaaaccctaattaactaattcaagactacagaccaaataaaataaa 320
Query: 121 agatttcagtaattaatagccataagttatataccagggtctaggatgcagtaactaaaa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttcagtaattaaaagccataagttatataccagggtctaggatgcagtaactaaaa 380
Query: 181 tgacggcacacagaactatagtccaagtatgctacccctcaattcagctaacagcaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacggcacacagaactatagtccaagtatgctacccctcaattcagctaacagcaggct 440
Query: 241 tactattgtcagatagtacagggttcctgaaattgaaatatgaatttgtctatataaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactattgtcagatagtacagggttcctgaaattgaaatatgaatttgtctatataaaaa 500
Query: 301 ttctccactgttaagtagttgccattgatcccactttccagaaccaccctttcagaccat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctccactgttaagtagttgccattgatcccactttccagaaccaccctttcagaccat 560
Query: 361 taagcaaaggtcaacaattaaattggctatctcaaaatttctaccctatatttctgtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagcaaaggtcaacaattaaattggctatctcaaaatttctaccctatatttctgtttg 620
Query: 421 aactctgtataaatttaggaagtcaggatccaaatactcagataaacacagctccctaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactctgtataaatttaggaagtcaggatccaaatactcagataaacacagctccctaaa 680
Query: 481 tatctgaaatgcttgaccctacttctttgaactgtgattttcacaagagaaagaatcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatctgaaatgcttgaccctacttctttgaactgtgattttcacaagagaaagaatcctg 740
Query: 541 atatacatgcaaagaaacccattacttcatcctgtttttctcccttcctatcatgcggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatacatgcaaagaaacccattacttcatcctgtttttctcccttcctatcatgcggtt 800
Query: 601 ctataaaacactagatgacaaatacttttaaccttaaactccactgaaatagaatatact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctataaaacactagatgacaaatacttttaaccttaaactccactgaaatagaatatact 860
Query: 661 ctattagaaatacctcatcaaagatgagcaccaccaggtttatgtaaacgcataaatgct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctattagaaatacctcatcaaagatgagcaccaccaggtttatgtaaacgcataaatgct 920
Query: 721 caaaacagctgttctacggtctactatttttacaaggttg 760
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 921 caaaacagctgttctaaggtctactatttttacaaggttg 960
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space: 862500
Effective search space used: 862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
