Query= MSMg01no125_h23.b1 MSMg01no125_h23.b1 CHROMAT_FILE:
MSMg01no125_h23.b1 PHD_FILE: MSMg01no125_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:33 2005
(665 letters)
>mm_chr17_10418367_10419429
Length = 1063
Score = 1263 bits (653), Expect = 0.0
Identities = 660/663 (99%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 3 gaattcaaattacaatactcatctgtacattaatatattaaaatgctagatttactatta 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaaattacaatacttatctgtacattaatatattaaaatgctagatttactatta 262
Query: 63 atgatttcaataaaagtatcacatactaaaaatgaaatgtcacaaaaagttaaatgagag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgatttcaataaaagtatcacatactaaaaatgaaatgtcacaaaaagttaaatgagag 322
Query: 123 tgaaaaaagtataaactgttgggagacatttgattttcctaattttgtcaatccagtgtc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaaaaagtataaactgttgggagacatttgattttcctaattttgtcaatccagtgtc 382
Query: 183 aaggattagttaacacagtgtgtggtccacaatgttctacctaatacaaggaacacaagg 242
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaggat--gttaacacagtgtgtggtccacaatgttctacctaatacaaggaacacaagg 440
Query: 243 ctactcaccaaccatcagaaaagcatgcaaacaaattaaagggagtatgaaaacaaccaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctactcaccaaccatcagaaaagcatgcaaacaaattaaagggagtatgaaaacaaccaa 500
Query: 303 actgaaggagatacacagagaggttattcatgtttcttctattaaacatattttaaatat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgaaggagatacacagagaggttattcatgtttcttctattaaacatattttaaatat 560
Query: 363 taaaaaaataaagaatccaggatgtatatcatacacttaagtgtaaaagaactaaaatta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaaaataaagaatccaggatgtatatcatacacttaagtgtaaaagaactaaaatta 620
Query: 423 acctagtaaatgtagtacttatttaaatatgggatataaatattgtttaacaaccacgta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctagtaaatgtagtacttatttaaatatgggatataaatattgtttaacaaccacgta 680
Query: 483 tgaagttctatatagtaaatttaacatgcaaattcggagggatgcacagaatacacagtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaagttctatatagtaaatttaacatgcaaattcggagggatgcacagaatacacagtt 740
Query: 543 gaaaacagggcactggatatgtatcacaaaaacttttcttaaagaataaatacactgctc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaaacagggcactggatatgtatcacaaaaacttttcttaaagaataaatacactgctc 800
Query: 603 tgttgtcattatcctctatttgttaacaactccaatcttgagttataagctatctaaact 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttgtcattatcctctatttgttaacaactccaatcttgagttataagctatctaaact 860
Query: 663 aaa 665
|||
Sbjct: 861 aaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space: 689715
Effective search space used: 689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_h23.g1 MSMg01no125_h23.g1 CHROMAT_FILE:
MSMg01no125_h23.g1 PHD_FILE: MSMg01no125_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:33 2005
(512 letters)
>mm_chr17_10510148_10511061
Length = 914
Score = 936 bits (484), Expect = 0.0
Identities = 506/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Minus
Query: 1 ctttaggaactactcatagcagcgacctggagtgttagttcccagtagctgtaggtttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctttaggaactactcatagcagcgacctggagtgttagttcccagtagctgtaggtttct 655
Query: 61 gtggacgcccggggcggggtttgggg--gggataggaccaacaagtctgttttaaatcga 118
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 654 gtggacgcccggggcggggttggggggtgggataggaccaacaagtctgttttaaatcga 595
Query: 119 gtagcgagtagtttctgtcttctcttttaaagtctctgagtggactgtttaaaggaagcg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtagcgagtagtttctgtcttctcttttaaagtctctgagtggactgtttaaaggaagcg 535
Query: 179 gaaaactatgttgtacagatgaacatggattttaggatcttgagaagaatgtcgaaaaat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaaaactatgttgtacagatgaacatggattttaggatcttgagaagaatgtcgaaaaat 475
Query: 239 tttagagatagctggttatatctgctggcatgtcagggaagaacaaaagactcccgagct 298
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tttagagatagctggggatatctgctggcatgtcagggaagaacaaaagactcccgagct 415
Query: 299 aaaagatggttaaagagtcatcctcagagcttccgttggatggggagctttgggcagtat 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaaagatgattaaagagtcatcctcagagcttccgttggatggggagctttgggcagtat 355
Query: 359 ttaaaacagaaaacattcagctattacacatgaacatgcaacagcaacacatcgaaagag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaaaacagaaaacattcagctattacacatgaacatgcaacagcaacacatcgaaagag 295
Query: 419 gcattttttattgttgggttggtatatttgttagcgttaaattgccctggagaaaaaact 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 294 gcattttttattgttgggttggtatatttgttagtgttaaattgccctggagaaaaaact 235
Query: 479 tgagctgcccctttaagggtttttgcctttccta 512
||| ||||||||||||||||||||||||||||||
Sbjct: 234 tgaactgcccctttaagggtttttgcctttccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
