BAC Information

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BAC

Clone NameMSMg01-125K24
Chromosome17 (Build37)
Map Location 32,945,081 - 32,945,223
singlet/doubletsinglet
Overlap geneZfp811
Upstream geneSnf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik
Downstream gene6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125K24.T7 (MSMg01no125_k24.b1)MSMg01-125K24.TJ (MSMg01no125_k24.g1)
ACCAG334711AG334712
length718723
length of high quality
(start - end)
146 (315 - 460)68 (215 - 282)
definitionCHROMAT_FILE: MSMg01no125_k24.b1 PHD_FILE: MSMg01no125_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:48 2005CHROMAT_FILE: MSMg01no125_k24.g1 PHD_FILE: MSMg01no125_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGCATCCGCGGAA
TTCTTAGGCAAAGCTCCCGCAAGCACTTGAAGCACACATCACGGAGGAAT
GCTGGCTGGCTTATAAACTCATGCGAAAATAGCTTTCTTATACAGACCAG
GACCCCCTGCCTAGGGAAGGTTCTTTTCATCATAGACTGGGCCTTCCCAC
ATCAATTAACTATCCACATGCTAATCTGATCCAGACAATTTCTCAAATGA
AATGCTCTTCTCAGATAACTAGAGACTGGGCCATGTTGACAGTTGAAGCT
AACCAGGATGCGGATTCCAGGGACGTCTTCCTCCAAATTCCCTGACCTGT
ACTCTTAGACTAAGGATTCTTAGGACTGGCACTGAATCCCTGACTTTCCA
AGTCCCCCTAACATTGTCCGACTCATATAAAGGGAGAGCCATATACCTGG
GATGGACAGGGTTGGCCTCTGTCAAAATTGCAATTGATGTAACTTGTTTC
TAAATATTGTTTGAAAACGGAAGTCCTGATGGAGGTAAGCCCTGACAGTA
TTGTGAATGTACTGTGAGAGGAGAAAGCCCTCCGTGTTGGCTCACAAGCT
TCTCGTAGCGTTGGGCTAAAGAGAGCTGTGGTTAACCCTTATTAGCAAGG
AACGGATAAAACTGAAGAGAGATTGATGTGGACCAGATGCACCAGTTAGC
GCTCCGAGAAGAGCAGTT
NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGGGTCCATTATGATCTTATAGGG
CCAGCATCACACATATGTACTGTGTCAGTGACAGGAACATCATTATGCAA
CACGTGATTATATGCACATAAGTATATATACATGTGGGTGCGTGTATATA
TATATATGTATATATAAATACATATATATACCCATATATATATATTTAAA
GAGAGAGATGCATGATACATTTATAAATTCTATACATTGCACACACACTT
ATATATATGAAAGAGTGAGGTCAGAGATTTGTGGTACATTGTGTTATGGC
CATTGGCTTATATATTGTGCGTTCTAAACATGCTACAACATGACGTCTGC
AAAGTGGAATCCAGCCTGCAAATAATTCTGATGCAAAGGCTTGGCATCCT
GTGCATGGGGAGATCCTTAGGAGAGGGAGTAGTCGGTGGAATAGGGTTGA
ATCTGAAAATGTAGCTTTTATTCCCATGCTGACTCTGATGCTTAATGTCT
CTTACAGTTAACCTACGACTACTTCAGGTCTCTGGATTGTCTTACCTATG
CCTAAAATATTACTCCCTCTGAGATTTCCCGTGGATTAATATCATCCTTG
TTGGTTTTCACTGAACACAGACTGGCTGCTTAGATCAGTTCTTCAGTCTG
AGCTCATCTTACTGAATCATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_k24.b1 MSMg01no125_k24.b1 CHROMAT_FILE:
MSMg01no125_k24.b1 PHD_FILE: MSMg01no125_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:48 2005
         (146 letters)



>mm_chr17_32944877_32945423
          Length = 547

 Score =  236 bits (122), Expect = 4e-67
 Identities = 138/144 (95%), Gaps = 3/144 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   agggacgtcttcctccaaattccctgacctgtactcttagactaaggattcttaggactg 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agggac-tcttcctccaaattccctgacctgtactcttagactaaggattcttaggactg 289

                                                                       
Query: 65  gcactgaatccctgactttccaagtccccctaacattgtccgactcatataaagggagag 124
           ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 288 gcattgaatccctgactttccaagtcctcctaacattgtccgactcatagaaagggagag 229

                                   
Query: 125 ccatata--cctgggatggacagg 146
           |||||||  |||||||||||||||
Sbjct: 228 ccatatatacctgggatggacagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 547
Length adjustment: 8
Effective length of query: 138
Effective length of database: 539
Effective search space:    74382
Effective search space used:    74382
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)