BAC Information

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BAC

Clone NameMSMg01-126L07
Chromosome17 (Build37)
Map Location 94,797,922 - 94,798,166
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668885, LOC668886, Mettl4, 2700099C18Rik, LOC100043754, LOC668888, LOC100038868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L07.T7 (MSMg01no126_l07.b1)MSMg01-126L07.TJ (MSMg01no126_l07.g1)
ACCAG335449AG335450
length700697
length of high quality
(start - end)
472 (43 - 514)247 (69 - 315)
definitionCHROMAT_FILE: MSMg01no126_l07.b1 PHD_FILE: MSMg01no126_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:11 2005CHROMAT_FILE: MSMg01no126_l07.g1 PHD_FILE: MSMg01no126_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGAGTCCCATTTTTAAATGGGGTTATTTGATTTTCT
GGAGTCCACCTTCTTGAGTTCTTTTTATATATTGGATATTAGCCCTTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAAACTGATGGTGGCCTTTTTG
TCTTATTGACGGTGTCTTTTGCTTTACAGAAGCTTTGCAGTTTTATGAGG
TCCCATTAGTCAATTCTCGATCTTACACCAAGAGCCATTGCTGTTCTATT
CAGGAATTTTTCCCCATGCCCATATCATCGAGGCTTTCCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACT
TAGATTTGACCCCACCACAAGGAGATGGGAATGGATCAATTTGCATTCTT
CTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTCTTCCACTGGATAGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGTTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCACTATACCAGTACCCTGCAGCTTTTTTTATCACAATTGCTCT
GGATTACCGTTTTAAGGTCAGGCATGGGGAATCCTCCCCAGGTTTTTTTT

ATGAAGTGGGAGGCCTGGCGGCGCCTTTTTCAAAACTGAGGTGAACTATA
GAAGTTACGCAAAAATTCCTTCATCAATAGGTTTTCTTGTTCATTAACTC
TTGGCCCCAAATGGAACTTCCCAAGAGAAACAATGCTTCCTGAATCTTAC
TTCCTAAGGAACAGCTCTTCACCACACCTGAAGAACCAAATGGTTAACAT
CTAAGAAAGCATTCCAAAATATAAGCTCCATTTGTACAAAAGGAGTGGGA
ACCAGAACTTCTAAAACATGCTTACATTGAAGAAATATCTGGAATGTGAA
ACTGCAAATAAAATCNCTGGATAGTGAGTTAAATATGAGAAGCTGGAATC
ATAAAAGGTATTATCCGGGGAACCTTGAATACTGACAATATTTAAAATAA
GAATGGCTCCCCGCCTCTGTAGTGGTTTGAATAGATTTGACGCCTTTAAA
CTCATGTGTTTGAAAGCTTGACCCACAGGGAGTGGACTAGTAAGAGGTGT
GTTCTTGTTGGAGGAAGTGTGTCGATGTGCGGGAGGCCTCCGAGGTCCTA
TGCTTATCTTCTTCCTGTGTTGAAGATATAAATTCTCCTCCCAGCTGTCT
TTCGAACCCTTGGTTGAGCTCCTTTTCCCTTACCATGCCCGCCTGACCCC
CCGTTTTGTCTTTCTTGCCGTATCACCCATTTCCGATACCCCTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l07.g1 MSMg01no126_l07.g1 CHROMAT_FILE:
MSMg01no126_l07.g1 PHD_FILE: MSMg01no126_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:12 2005
         (247 letters)



>mm_chr17_94797722_94798368
          Length = 647

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcatcaataggttttcttgttcattaactcttggccccaaatggaacttcccaagaga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctcaataggttttcttgttcattaactcttggccccaaatggaacttcccaagaga 260

                                                                       
Query: 61  aacaatgcttcctgaatcttacttcctaaggaacagctcttcaccacacctgaagaacca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aacaatgcttcctgaatcttacttcctaaggaacagctcttcaccaaacctgaagaacca 320

                                                                       
Query: 121 aatggttaacatctaagaaagcattccaaaatataagctccatttgtacaaaaggagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggttaacatctaagaaagcattccaaaatataagctccatttgtacaaaaggagtgg 380

                                                                       
Query: 181 gaaccagaacttctaaaacatgcttacattgaagaaatatctggaatgtgaaactgcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccagaacttctaaaacatgcttacattgaagaaatatctggaatgtgaaactgcaaa 440

                
Query: 241 taaaa 245
           |||||
Sbjct: 441 taaaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)