BAC Information

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BAC

Clone NameMSMg01-127G15
Chromosome17 (Build37)
Map Location 69,224,793 - 69,225,141
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap28, D930040M24Rik, EG622645
Downstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G15.T7 (MSMg01no127_g15.b1)MSMg01-127G15.TJ (MSMg01no127_g15.g1)
ACCAG335964AG335965
length7101,683
length of high quality
(start - end)
353 (40 - 392)---
definitionCHROMAT_FILE: MSMg01no127_g15.b1 PHD_FILE: MSMg01no127_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005CHROMAT_FILE: MSMg01no127_g15.g1 PHD_FILE: MSMg01no127_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACATACTACGTGTTAAACTACCCAAACTCTCTTCCTATTTAGAAGCTGAA
TTTCGAGACATTACCATTACCTCTCCAGAATTTCGGAATCACCGAGAGAA
GCAAAAGTCAGCTTGTCAGCTTTAACACAGTATAGTGACATGGAGCGGGG
ATCAGTGTAATAAATGTGTACAAACCATGGCTTAAAGTCACGGGCTTAAA
CAAGAAGAACCCATGATCTCAGCTGACAGATAGCAGGTTCCTAGGCAACA
AAATCTTTTACCAAGATGGCCAAGTAAAGGATGTTCACAGTTCAAAATCC
AAGTGTATCAAAAAAATCTTTAGCGTATCAAAGTCAGTAAGTCATACCAG
TAGAGCCCACCCCAGGAAAAACCAAGCACTTAGAAGATTTTTTTTCCCAA
GAACTTAAACTCTATAATGAAAATCCCAAGGAGATGTAAAATAGATGAAA
AATATCCATATTTTCAATTACACATGTAAGGGTTAATGAATGGATTTGGG
GAAAGGCTATAAAAGCCTTGTAGCAAATATTCTTTCTCTCATTCTGAATT
ATTGGCCGTTGTACAAATGATGTTCACTCTTCCTGAATACTGTTTCTATT
ACCCCAAATACTTTGCCTCACATTTTCATCCACCTTTTCATCTACCATTG
CTCGTTACAN
CTTTTTTTTTTTTTGNTTNCNTTTNNNTTTCCCTNNTTNNTCTTCCTGTT
NCTCCTCTTCGTGTNNCTATCTTTTTTTTTTTTTNNNTTTATTCTGNTCT
NTTTTTTTTTCCTCTTCGTCTCTTCTGTTTTTTCTCCTGCTTATNCTGTT
TTCGCTCTTNCTTGTCTCTTNTGCTTNTCNCCCTGCCNNGCGATNNCTCG
NACCTACTANCNTTGCTACTATNTTTTTNCTNCTTNTTTNTTGATNTTAA
TTCGTACACACTACCGTACCCGCACCATNTNCATACGCGCGTNCTGCGCA
CCCCTCGCTACCATGCGCCATNCGTCTATACACTACTACATAAACCATCA
CACNCATAACATCCTATCATCANACTACATCACTGACTTACTGATACCAT
CTATACATATTACATCCGTAGTATACTATNTATATCATACTGACTCCATA
NCCTAGATCGACCGACTGTAACCGCANTAGTCTACCGCTCNTATATTACT
ATATACTTCANCACACCNCCACTCGTAATATGTACATCTGATACATCAGC
TGTACGGGTTCGCNTNACTCGTGGCANGCGACGTTAGTGTTACGCGATAT
ACACTNTCGACTCGCCGGCCTGTCACCTGACCTCCACGAGTCTGTAGACG
ATTGTTGCATGCAGCTACTCATCACGTATATCTGACGTACCGTGATACGC
CGAATATCAAGGCCGCCAGATAGTNGAGTGATTGCCGCGTCGTNGTCTGN
GCGACCGCTNATTACGCGCGCGTGTGCATATATCCTGTAGTATGCTCGTT
GTCATGGTCTCGTGTGTTGTGTTGTGATGTGCCGTAGCTGGGCTCGTAAC
TCGTACATGCGTGNCGCCGTACGTATGCGCTCGAGTGCCAGTCGATACTG
CTGGTGTATCGATATGTGTGTNTGGATACTNTNNCGCCGACTGTGTATGT
GTATTGCTCGCGCGCGACTTTGACGCGNACGCTGTTAGTATATGTAGTCG
CGCTCGTCTCGTNGTACGGTATCACTGTATTGTGATCATCCGCCGAGCTA
TAGATTTGCTCGCTCGCCATCGTCCCNGATATGTGTAGTCTAGTTTGCTC
GCGTGTGCCTGTCTAGTTTGCTGTGCANGCGTGTCGTGTACGTTAGATGC
GCGAGCGACGTANCGAGNTGTACAGAGTGCGTCATGTGTGGAGAGTGCTG
AGATGTGTGCGCACGTGTGCGATGCGTACAGTACTGTGTAGTNATTGTAC
TANAGTNAGATATCACAGCGTGACTGAGNCAGATGAACACAGCTGACACG
TCTGCGATGCCTGCGTCGTACCTGTGTTCTGATGTTGCGTCGATGTCACA
CGCCGCACGNGCGCGATGATCTCACTATGTGTCTACCGCACTCCGTCGAT
ATACTGCGCGCTGCGCGCTCGTGTGTGTATCAACACGTACTCNTGGCGTG
TGGCAGTCGCGTACAACAGCGTGTATACGTGATGCCGGACGCNGTCGTAC
GTCATGTTTGACGNCNTCGCTAGTATGTGATTATTGTCGCGACACGNCGC
GTATGATTGGTGCTGTCGGCAGCGTGTGTANGTGCGTGTGNCTCGTGCGC
GATTGCTAGACACGTCGTNGCGCGTCGTTGTGTGATCGCCGTACTACTTG
CTACTATCGCTGACTCTGNCAACTGACCGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g15.b1 MSMg01no127_g15.b1 CHROMAT_FILE:
MSMg01no127_g15.b1 PHD_FILE: MSMg01no127_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:08 2005
         (353 letters)



>mm_chr17_69224589_69225341
          Length = 753

 Score =  598 bits (309), Expect = e-175
 Identities = 339/349 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatactacgtgttaaactacccaaactctcttcctatttagaagctgaattt 64
           ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 553 gaattccacatacaacgtattaagctacccaaactctcttcctatttagaagctgaattt 494

                                                                       
Query: 65  cgagacattaccattacctctccagaatttcggaatcaccgagagaagcaaaagtcagct 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctagacattaccattacctctccagaatttcggaatcaccgagagaagcaaaagtcagct 434

                                                                       
Query: 125 tgtcagctttaacacagtatagtgacatggagcggggatcagtgtaataaatgtgtacaa 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtcagttttaacacagtatagtgacatggagcggggatcagtgtaataaatgtgtacaa 374

                                                                       
Query: 185 accatggcttaaagtcacgggcttaaacaagaagaacccatgatctcagctgacagatag 244
           |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct: 373 accatggcttaaagtcacgggcttaaacaagaagaatccatgatctcagccgacggatag 314

                                                                       
Query: 245 caggttcctaggcaacaaaatcttttaccaagatggccaagtaaaggatgttcacagttc 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 caggttcctaggcaacaaaatcttttagcaagatggccaagtaaaggatgttcacagttc 254

                                                            
Query: 305 aaaatccaagtgtatcaaaaaaatctttagcgtatcaaagtcagtaagt 353
           |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 253 aaaatccaagtgtatcaaaaaaatctttagcgtatcaaagtcagcaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)