BAC Information

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BAC

Clone NameMSMg01-128I13
Chromosome17 (Build37)
Map Location 83,399,831 - 83,552,349
singlet/doubletdoublet
Overlap geneLOC100043900
Upstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
Downstream geneAW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128I13.T7 (MSMg01no128_i13.b1)MSMg01-128I13.TJ (MSMg01no128_i13.g1)
ACCAG336778AG336779
length698745
length of high quality
(start - end)
342 (70 - 411)225 (70 - 294)
definitionCHROMAT_FILE: MSMg01no128_i13.b1 PHD_FILE: MSMg01no128_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:39 2005CHROMAT_FILE: MSMg01no128_i13.g1 PHD_FILE: MSMg01no128_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,552,008 - 83,552,349)(83,399,831 - 83,400,052)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCCACATCCTCCCAGTGCCTGTTGTATTCATTTCCTTTCATCTCCTT
CGGGCATATTAGGGCCTCCCAGCATCTGGCAGCCCTAGCTCAGTTTGGCA
TGAGTTGTAGACAATCTTAGAACTTGACTCTTCTGCTGGGGAGAGGCTGG
GCCCTTCTGAAGCACCCACCAATCGGTAAGATTTGGAAGCACCATGAACA
AAGAGGAATGAAGAACCTGGGTTTGAGTCTGAGTCTAGTCGCTCAGGCGA
GCCCTTCTTATGCTTCCGGTGCAGGGCCTCCCCCTAGCCTCAGCACTGTT
CTGGGTGTATTTTCCAAAACAGACCACAGCAGTATACTTGCTGCAATGTC
TTCTTCCAGAGCCCACCCCATCATCCCTGAGAAATCCAAGATCCCCTTGA
ATCTAGGTAGGTCTTTGTAAATTGCATCAACACTCAGAATGTGCTAGAAA
TGGCATTGAGGGACTTCATAGACTAGGCCACAGCAGCTTCTCCTGGTCCA
CTCTTTTTCTCTCTATCACCTAGTTAGAACTTGGCCTCCTGGGCTGATAA
TGCCCAGCCCATGCAGGATGGGCTGTGCAAGGTCTGTCCTGTAATCTGAA
TGGTACCTCATCTGACAGTCCTAGTGAGCAGACTGGTGATTGCCTCGC
TTCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAGAAAGTCACCTGTCCTTGGGCAAGTGGGGC
TTACTGGTTAACTTCAGCGCTTACAGGACCTGCCTGGAGGATACAGAACT
TGGAGGTGTGTTCTTATCCCTGCCCCACCCTGCCTCCTGTCCACCAGATG
AGCCACTTCGCTACAGCGCGCATGTGCATAGAGAGAGAGAGAGATAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACC
GCCCCTTCCTTTTCTTTTTTTTCCTCCCTTCCCTCTTCCCTTTCCACCCT
TTTCCTACCCTCTTTTCTCTTTATTTTTCTCCCTTTTTCTTTTTTTTTTT
TACTTACAATTCCCCCCCGCTTTTTCCCTTTTTTTTCTTTTCCCTTTTCT
CTTCTCCCTCTTTTTGTCTTTTTTTCTCTTTCCTCTTCTTTTCCCCCCTT
TTTTTCTCTCCTTCCTTTCCTTCCCCCCCTTTTTCCCCTTTTTTTTTTCC
CCCCTTTCCTTCCCCTTTTTCCCTTCTTTCCCTCTTTTTCCTTTTTCTTT
CTCCCCTCTTCCTCTCCCCCCACTTTCTCACTTTTTTCTTTTCTCCCCTC
CTTTTTTACCCCCCCCCCCTTTTTCCTTCTCCCCACTTCCCCTTTCTTTC
CCTTTTTCCCCTTTCTTCCCTCCCTCTTTTTTTCTTTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_i13.b1 MSMg01no128_i13.b1 CHROMAT_FILE:
MSMg01no128_i13.b1 PHD_FILE: MSMg01no128_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:39 2005
         (342 letters)



>mm_chr17_83551808_83552549
          Length = 742

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctgttgtattcatttcctttcatctccttcgggcatattagggcctcccagcatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gcctgttgtattcatttcctttcatctccttcgggcatattagggcctcccagcatctgg 483

                                                                       
Query: 61  cagccctagctcagtttggcatgagttgtagacaatcttagaacttgactcttctgctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cagccctagctcagtttggcatgagttgtagacaatcttagaacttgactcttctgctgg 423

                                                                       
Query: 121 ggagaggctgggcccttctgaagcacccaccaatcggtaagatttggaagcaccatgaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 ggagaggctgggcccttctgaagcacccaccaatcggtaagatttggaagcaccgtgaac 363

                                                                       
Query: 181 aaagaggaatgaagaacctgggtttgagtctgagtctagtcgctcaggcgagcccttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaagaggaatgaagaacctgggtttgagtctgagtctagtcgctcaggcgagcccttctt 303

                                                                       
Query: 241 atgcttccggtgcagggcctccccctagcctcagcactgttctgggtgtattttccaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgcttccggtgcagggcctccccctagcctcagcactgttctgggtgtattttccaaaa 243

                                                     
Query: 301 cagaccacagcagtatacttgctgcaatgtcttcttccagag 342
           ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 242 cagaccatagcagtatacttggtgcaatgtcttcttccagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no128_i13.g1 MSMg01no128_i13.g1 CHROMAT_FILE:
MSMg01no128_i13.g1 PHD_FILE: MSMg01no128_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:40 2005
         (225 letters)



>mm_chr17_83399631_83400255
          Length = 625

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagtcacctgtccttgggcaagtggggcttactggttaacttcagcgcttacaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agaaagtcacctgtccttgggcaagtggggcttactggttaactttagcgcttacaggac 260

                                                                       
Query: 61  ctgcctggaggatacagaacttggaggtgtgttcttatccctgccccaccctgcctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcctggaggatacagaacttggaggtgtgttcttatccctgccccaccctgcctcctg 320

                                                                       
Query: 121 tccaccagatgagccacttcgctacagcgcgcatgtgcatagagagagagagagatagag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 321 tccaccagatgagccacttcgctacagcgcgcatgtgcagagagagagagagagagagag 380

                                                     
Query: 181 agagagagagagagagagagagagagagagagagagagagag 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagagagagagagagagagagagagagagagagagag 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)