BAC Information

Click to search

BAC

Clone NameMSMg01-128L16
Chromosome17 (Build37)
Map Location 43,860,652 - 43,861,030
singlet/doubletsinglet
Overlap geneCyp39a1
Upstream geneGpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27
Downstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L16.T7 (MSMg01no128_l16.b1)MSMg01-128L16.TJ (MSMg01no128_l16.g1)
ACCAG336923AG336924
length739694
length of high quality
(start - end)
379 (66 - 444)---
definitionCHROMAT_FILE: MSMg01no128_l16.b1 PHD_FILE: MSMg01no128_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:55 2005CHROMAT_FILE: MSMg01no128_l16.g1 PHD_FILE: MSMg01no128_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACGCGGAATTCACTGG
AAAATTTCCACAAAAGGAGATCACTGGAGTTGATAAGATGTCTCAGCAGC
TAAGAGAACTTCTTGTCCATGAAGAGGGCCTGGGTTTGGTTCACAGCACT
CACAACTACCCATGACTTCAATTCCAGGCAGACTGAACATTCTCTTCTGG
CATGAGGTATTCATATAGCACATATAGATACATGCAGGCAAATACCCATA
CACATACAATAAATAAATCTTTTTAAAGCACTGGATATCATTATGTTATG
TAAAATAATGCAGACTGTAAAAGAAATATATGGCTTGTTTTCTCTTATGC
AAAATCTACATTTAAGCGCATCTATGAGCATGTATATATGCTATGACAGT
AGATAGGAACTACCACAGGGAAGATAGACTTTAGAAGGAGAACAAGAGAG
AGTAGTGGAATGTAATTAATGCATGGTAAGGGGTCAGCACCAGAAGAGGT
CAGATGGGTAAGAGTAGTAAAAACTTGCATAACACCGAAGTATATAGAGA
GATATTTGTGCCTGAAAACATCACAAAAATGCAATTTTAAAAGAAACACA
CACTCATACACTTCGTATGATATTAAAATGACCTGTTTTAGATTTGGAAC
TTGGACAGCAGATCTCACTATAAATCCCCCTGCCCTTGGACTTGCGATCC
TCTAGAATCATCCTTCTGACTGGCTCAGCTGAATTCCAG
TTGTTTTCTATTACATATCGTCCCCTTTTTTTTTTTTCCTTATCATACCT
TTTCTCTCTCCCCTCTTTTTTCTATAATAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCAATTAAATCT
TCTGCTTTAGTTTAACTGTGAATGGTTCCTCCGCAAGGTTCTTTAAGAGC
ATTTGATAAACAAATTGATTTGAAAGCATTGATCTTGGCAGGCAATGATT
CTATAAGGAAGCCAAAAGTTCACCAACCCGGTTATTATTTGTATAATATG
CTGGCCTCCCTTGAACAAAATTTGGGCCGGGCCTAATCCTTCGGGATTTT
TAGTATGAATTTTTGTTTCATATAGGAAATCCTATGGGAATAAAATTTCT
TTATACACTCTCCCCAATTTTTTCCCTTTTTTTTTTTTTTTCCCACCTCT
CCCATAAAGATTTAATGTTTTTTTTAAAACCTTTGGTGTTCCTCTTTTAC
ACCCCCTTTAACTAAATTTCCTTTCATAGTTCGGAGTTCTATACTTTTTT
AAATAAAAGTGTTGTGGGGGTTGGACCCCCCCTCTTTTTTTGTTTTAAAA
CACAACTTTTTTCTCTTTTCCCCCCCCCGAATGATATTGTCCTCTTTTTT
GCGCGGCGGTTTTTCCTTTCCCCTTGGGGTTTCTTTTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l16.b1 MSMg01no128_l16.b1 CHROMAT_FILE:
MSMg01no128_l16.b1 PHD_FILE: MSMg01no128_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:55 2005
         (379 letters)



>mm_chr17_43860254_43861032
          Length = 779

 Score =  650 bits (336), Expect = 0.0
 Identities = 369/380 (97%), Gaps = 2/380 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagatcactggagttgataagatgtctcagcagctaagagaacttcttg-tccatgaag 59
           |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 777 ggagatcactggagttgataagatgtctcagcagctaatagaacttcttgct-catgaag 719

                                                                       
Query: 60  agggcctgggtttggttcacagcactcacaactacccatgacttcaattccaggcagact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agggcctgggtttggttcacagcactcacaactacccatgacttcaattccaggcagact 659

                                                                       
Query: 120 gaacattctcttctggcatgaggtattcatatagcacatatagatacatgcaggcaaata 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 658 gaacattctcttctggcatgaggtattcatatagcacatatagattcatgcaggcaaata 599

                                                                       
Query: 180 cccatacacatacaataaataaatctttttaaagcactggatatcattatgttatgtaaa 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 598 cccatacacatacaataaataaatctttttaaaggactggatatcattatgctatgtaaa 539

                                                                       
Query: 240 ataatgcagactgtaaaagaaatatatggcttgttttctcttatgcaaaatctacattta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ataatgcagactgtaaaagaaatatatggcttgttttctcttatgcaaaatctacattta 479

                                                                       
Query: 300 agcgcatctatgagcatgtatatatgctatgacagtagataggaactaccacagggaaga 359
           || | |||||||||||||||||||||||||||||||||||||||||||  | ||||||||
Sbjct: 478 agtgtatctatgagcatgtatatatgctatgacagtagataggaactaggagagggaaga 419

                               
Query: 360 tagactttagaaggagaaca 379
           ||||||||||||||||||||
Sbjct: 418 tagactttagaaggagaaca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)