Query= MSMg01no129_f02.b1 MSMg01no129_f02.b1 CHROMAT_FILE:
MSMg01no129_f02.b1 PHD_FILE: MSMg01no129_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:41 2005
(495 letters)
>mm_chr17_81295948_81296842
Length = 895
Score = 857 bits (443), Expect = 0.0
Identities = 482/495 (97%), Gaps = 2/495 (0%)
Strand = Plus / Plus
Query: 1 ataggccaagacttgtagtgttttcttacagaagtctgctcacacaccatttgaccaggg 60
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ataggccaagacttgtggtgttttcttacagaagtctgctcacacaccagttgaccaggg 260
Query: 61 tcttaaaagaatccttatctagct-cgaccagagaaatgccaacccaagggaacttggaa 119
||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 261 tcttaaaagaatccttatcta-cttcgaccagagaaattccaacccaagggaacttggaa 319
Query: 120 tttctggattttgaaggcaacaagacctaaggtaagaggaatgtccaagagtagtacagg 179
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 tttatggattttgaaggcaacaagacctaaggtaagaggaatgtccaggagtagtacagg 379
Query: 180 gactcccttcttatacttatttcaggtgtagccttggagaataatgaatttaagggtatc 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gactcccttctgatacttatttcaggtgtagccttggagaataatgaatttaagggtatc 439
Query: 240 tatccataaggaaaatttcagggtagtcaagatatgcaatcttcttgtactatgtatgat 299
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatccataagaaaaattccagggcagtcaagatatgcaatcttcttgtactatgtatgat 499
Query: 300 atatgtcatctattgtaaaaggtgttttgatagaagtcaccttgttgctcctcataggca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 atatgtcatctattgtaaaaggtgttttgatagaagtcaccttgttgctcctcaaaggca 559
Query: 360 atactataaaggcattctagtttaatttctattgtgaccaaaagcaaatttgcttcttaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atactataaaggcattctagtttaatttctattgtgaccaaaagcaaatttgcttcttaa 619
Query: 420 agtttttttcattttcttaatttctctccaatatataatccaaggagaatatctttgttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 agtttttttcattttcttaatttctctccaatatataatccaaggagaatatctttattt 679
Query: 480 tctctttttatttgc 494
|||||||||||||||
Sbjct: 680 tctctttttatttgc 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_f02.g1 MSMg01no129_f02.g1 CHROMAT_FILE:
MSMg01no129_f02.g1 PHD_FILE: MSMg01no129_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:41 2005
(372 letters)
>mm_chr17_81459417_81460188
Length = 772
Score = 683 bits (353), Expect = 0.0
Identities = 368/373 (98%), Gaps = 2/373 (0%)
Strand = Plus / Minus
Query: 1 tccattcatctctcctgccacacatccaacccgtgggatttatgtatctctagattatga 60
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 572 tccattcatctctcc-gtcacacgtccaacccgtgggatttatgtatctctagattatga 514
Query: 61 tgttcagagcagggcatatagtgtaatgtaaaggagatgatgaagcttttaaaaatgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgttcagagcagggcatatagtgtaatgtaaaggagatgatgaagcttttaaaaatgtca 454
Query: 121 ccttatcatttacatagct-aaaaaaaatcatcctttatcaacaaatacctaattagtat 179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ccttatcatttacatagctaaaaaaaaatcatcctttatcaacaaatacctaattagtat 394
Query: 180 tcaaaattgaatttgtttatagcaccatttttctttttaagtttgtgtgagttagtaggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcaaaattgaatttgtttatagcaccatttttctttttaagtttgtgtgagttagtaggg 334
Query: 240 atttaaatgccctccacacattgtgattggtttatagtctttttcatctaatgtataaat 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atttaaatgccatccacacattgtgattggtttatagtctttttcatctaatgtataaat 274
Query: 300 ttacctgtgtttctctcaggattttcatgttaaagtgactgttaagctaaagcaatctgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttacctgtgtttctctcaggattttcatgttaaagtgactgttaagctaaagcaatctgt 214
Query: 360 aaaataaaagctg 372
|||||||||||||
Sbjct: 213 aaaataaaagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
