BAC Information

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BAC

Clone NameMSMg01-130K02
Chromosome17 (Build37)
Map Location 62,549,887 - 62,550,129
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130K02.T7 (MSMg01no130_k02.b1)MSMg01-130K02.TJ (MSMg01no130_k02.g1)
ACCAG338333AG338334
length7141,177
length of high quality
(start - end)
244 (76 - 319)390 (480 - 869)
definitionCHROMAT_FILE: MSMg01no130_k02.b1 PHD_FILE: MSMg01no130_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:30 2005CHROMAT_FILE: MSMg01no130_k02.g1 PHD_FILE: MSMg01no130_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACAAAACATTACCCTGAATCAGCGATAGCTGGAAAGCTCCTTAGAG
TAACATTCATGTGAGTAACAATTCCCAATTCGTCAGCCTCCTCCCTGCCT
CCTCTCCAGCTCCAGCATCAGTACTCCTCTACAGGACCAGCACAGTAGTT
TTCTACGTGCTTGCTTTACCCCACATAGGACTTCCTTCTAGATCATTGCT
CACTTTGCAAAACAAGATGATCTTTGAGATCATAGCTGGTGTATCTCTGA
TAAAATTCCTTTAAAAAAATGACCTTTTTTAAGCTAAATAAGGGAGAGCT
CATACCCTGAAAATAAATAATTCCCCCGCGCCCCCCGATTATATGGATAC
ATTCACACTCAGCTCCCCGCCCACATATAAAAAAAATACTTCCCGAAGGA
GACGCGCACTCCTGTTCTCCCGTCTTTCCCGGCGCCCCTTTCTTAACAAG
ACGATTTACTCCATTCTCCGCCAAACATTCTCCACCTTATCTGCCGCAGT
TCAACAACCAATTTCTTGTATTTGCTCTTTGTTTCACCTCATCCCCCTTT
TGTTTGCGTCACTTTTGATACCTCCTTGCATGATCATAACTCCGGTTTGT
CCTTCTTCTTCCGTATTTTAACCATCAACCGCACCTACCTACCCTTATCA
CCTTTTTTTTTTCT
NCCCAACCCTNNNNNAAAACATGTGAGGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTATAACACAATGTGATTAA
AAAAAAAAAGCAAGCAAACCCCCTTAAAATAACCAAATCAAAACAAAACG
ACAACAACAAAAGTCAGCCCCATTCATAATGACCTTAAAAAAAATTAAAC
AAACAAATGAAAAACTAACAGCAACAACAAAGTTAAGACCTTTGATACAC
TTAACTAGGAAAAGAAAACAGTGCAATAAAAAGCAGAAAGCCTCAAAGAG
TGAAGTTAAATGAGTCATTTCCTGGAAGGCAGAAAGAACACTCTTGTCCA
TGGATAGAGAGAATTTAAATTTGTTTAAAATGCCCAGATGACTAAAATTT
TTCTATATATTATTTTTAGCTTTAAAAAACATCAACGGCACTCTAACAGA
ACTAAAGAATATATTTCTGACATCCCCATGCAAACACAGAAGACCCCTCA
CAGTTGAATTATCCTTAAGCAAGGGGACAGTGCCAGAAGTCTGACAACAA
CCCATTTAAAATATACTATGGAGTCATAGTGAGCAGTCTGGTATTAGCAT
GAAAACGGGCCAATGTAAAAGAAATGGAGCTCTCAGACAGAAATCTGCAT
ACCTACAGGCAACTAATTCAGACAATGGTACCCAGAACACACACTGGAGG
AAATGCAGTCTACTAAAACAATGCTCTGAAAACTGGGTATCCACATGAGA
AGACTGGGGATCGATTCCAACAATTCAATGCGTACAGAAAACAATCCAAA
TGAATCAAACATGTTTAATAAAAACTTTAAAGTGCTATACTAAAGTAGGA
GATATACATTAAAATGTGACATGTAACACCTTTCTCAATTGGACACAAAT
ATTATAAGAACTGGGGGAGATGGGAGGTGGAGGGACAACTGGAAAGCATG
TAGGGGGAAAGAAAACTGGGCAGGAAGTCATGTATGAGAGAATAATAAAC
TCAAAGAATGAAAAGTAACCTTTTGAAATCATGACTACATCCATAAAAAA
AACTTCTGCCACCCGAAAATAACTCGTTGAACCCCAAAAAAACCCGTCAA
AATTAAAAAACTGGCTTTTGCACCCATTTTTTGGATAAAAATTTTTTTCC
CAATAATTTTATAAACCCCCAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_k02.b1 MSMg01no130_k02.b1 CHROMAT_FILE:
MSMg01no130_k02.b1 PHD_FILE: MSMg01no130_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:30 2005
         (244 letters)



>mm_chr17_62549686_62550329
          Length = 644

 Score =  402 bits (208), Expect = e-117
 Identities = 235/244 (96%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcgatagctggaaagctccttagagtaacattcatgtgagtaacaattcccaattcgtca 60
           |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 444 gcgataactggaaagctccttagaggaacattcatgtgagtaacaattccaaattcgtca 385

                                                                       
Query: 61  gcctcctccctgcctcctctccagctccagcatcagtactcctctacaggaccagcacag 120
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 gcctcttccctgcctcctctccagctccagcatcagtactcctctgcaggaccagcacag 325

                                                                       
Query: 121 tagttttctacgtgcttgctttaccccacataggacttccttctagatcattgctcactt 180
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtttcctacgtgcttgctttaccccacataggacttccttctagatcattgctcactt 265

                                                                       
Query: 181 tgcaaaacaagatgatctttgagatcatagctggtgtatctctgataaaattcctttaaa 240
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 264 tgcaaaacaagatgatctttgagatcatagttggtgtatctctgataaaattcctt-aaa 206

               
Query: 241 aaaa 244
           ||||
Sbjct: 205 aaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)