BAC Information

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BAC

Clone NameMSMg01-131E07
Chromosome17 (Build37)
Map Location 89,049,307 - 89,049,957
singlet/doubletsinglet
Overlap genenone
Upstream geneTacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866
Downstream geneGtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E07.T7 (MSMg01no131_e07.b1)MSMg01-131E07.TJ (MSMg01no131_e07.g1)
ACCAG338814AG338815
length717714
length of high quality
(start - end)
648 (70 - 717)236 (121 - 356)
definitionCHROMAT_FILE: MSMg01no131_e07.b1 PHD_FILE: MSMg01no131_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:25 2005CHROMAT_FILE: MSMg01no131_e07.g1 PHD_FILE: MSMg01no131_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGATTGGCAACTGGAGGCAGGAGCCAATCCAGAGCCACGGAG
AGGTGAGCATGCTCACTGGTGTGCTCTGCAGGATTTGCTCTGTTTGATTG
GTTTATATAGCCCGAGGTCACCTGCCCAGGAGTGGCACCACCCCCAGTGG
TCGAGGCCCTCCCATGTCAGTCATTAATCAAGAAAATGTCCCCAGACTTG
CCCAGTCATATGGAGACATTTTCTCAATTGAGGATTCCTCTTCCCAGATG
GCTCTAGCTTATGTTAGAGTGGAAACAACAACAACAACACAAAACACAAA
ACCTTAAGCAACACACTTTATCTTAGAATTGTTTATCAGTTCTGTAAGTT
GAAGAAAACTGATGTTAATGAACATGACCCTTGTCCACAGAAAGGCAAAC
TGGTTGTGTTAGGCTAAGAGGATTGTGTTGGCCATTTGTCAGCAGAGGCT
CAGAGCATCTAGCACAGTGGTTCTCCACCTACCTAAGGCTGCAAGCCTTT
ACCATGGCTCCTCACGGTGTGCTGGTCCCTAATCATAATATTTTGTTGCT
ACTTCATAACTGTAATTTGCTACTGTTATGAATTATAGTGTAAATATCTA
ATAGACAACCCTTGTGAAAGGATCGTTTGACTCCCAAAGAGGTCATGACC
CCAGGCTGAAACCACTG
ACGATGTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTCACCTGAGGAATACCGAATGGCAGAGAA
ACACCTGAAAATTGTTCCACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACTTTTTTTGGGCACACCCCCCGAAGATGCCCCAACAGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAACGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCCAAACCTAGGATTCTCAAGATATAAGATACAATTTGCTAAAC
ACATGAAACTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e07.b1 MSMg01no131_e07.b1 CHROMAT_FILE:
MSMg01no131_e07.b1 PHD_FILE: MSMg01no131_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:25 2005
         (648 letters)



>mm_chr17_89049038_89050085
          Length = 1048

 Score = 1228 bits (635), Expect = 0.0
 Identities = 646/651 (99%), Gaps = 3/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaggcaggagccaatccagagccacggagaggtgagcatgctcactggtgtgctctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tggaggcaggagccaatccagagccacggagaggtgagcatgctcactggtgtgctctgc 861

                                                                       
Query: 61  aggatttgctctgtttgattggtttatatagcccgaggtcacctgcccaggagtggcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aggatttgctctgtttgattggtttatatagcccgaggtcacctgcccaggagtggcacc 801

                                                                       
Query: 121 acccccagtggtcgaggccctcccatgtcagtcattaatcaagaaaatgtccccagactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acccccagtggtcgaggccctcccatgtcagtcattaatcaagaaaatgtccccagactt 741

                                                                       
Query: 181 gcccagtcatatggagacattttctcaattgaggattcctcttcccagatggctctagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcccagtcatatggagacattttctcaattgaggattcctcttcccagatggctctagct 681

                                                                       
Query: 241 tatgttagagtgga---aacaacaacaacaacacaaaacacaaaaccttaagcaacacac 297
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatgttagagtggaaacaacaacaacaacaacacaaaacacaaaaccttaagcaacacac 621

                                                                       
Query: 298 tttatcttagaattgtttatcagttctgtaagttgaagaaaactgatgttaatgaacatg 357
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 620 tttatcttagaattgtttatcagttctataagttgaagaaaactgatgttaatgaacatg 561

                                                                       
Query: 358 acccttgtccacagaaaggcaaactggttgtgttaggctaagaggattgtgttggccatt 417
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 acccttgtccacagaaaggcaaactgattgtgttaggctaagaggattgtgttggccatt 501

                                                                       
Query: 418 tgtcagcagaggctcagagcatctagcacagtggttctccacctacctaaggctgcaagc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtcagcagaggctcagagcatctagcacagtggttctccacctacctaaggctgcaagc 441

                                                                       
Query: 478 ctttaccatggctcctcacggtgtgctggtccctaatcataatattttgttgctacttca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctttaccatggctcctcacggtgtgctggtccctaatcataatattttgttgctacttca 381

                                                                       
Query: 538 taactgtaatttgctactgttatgaattatagtgtaaatatctaatagacaacccttgtg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taactgtaatttgctactgttatgaattatagtgtaaatatctaatagacaacccttgtg 321

                                                              
Query: 598 aaaggatcgtttgactcccaaagaggtcatgaccccaggctgaaaccactg 648
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaggatcgtttgactcccaaagaggtcatgaccccaggctgaaaccactg 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)