BAC Information

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BAC

Clone NameMSMg01-132P24
Chromosome17 (Build37)
Map Location 46,789,846 - 46,938,296
singlet/doubletdoublet
Overlap geneCul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Upstream geneCapn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132P24.T7 (MSMg01no132_p24.b1)MSMg01-132P24.TJ (MSMg01no132_p24.g1)
ACCAG340091AG340092
length689675
length of high quality
(start - end)		597 (71 - 667)527 (73 - 599)
definitionCHROMAT_FILE: MSMg01no132_p24.b1 PHD_FILE: MSMg01no132_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:41 2005CHROMAT_FILE: MSMg01no132_p24.g1 PHD_FILE: MSMg01no132_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,789,846 - 46,790,442)(46,937,770 - 46,938,296)
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCCGCGGA
ATTCAGTATGGCTATCGAAACTCTGATCTCTGAGCTGGTGCAGGCCATGC
GCTGGGACGGGGCCTCATGCAGACCAGAGAGTTCTTCCTCCTCCACCTTC
CAGCCTCGGCCAGCACAGTTCCGCCCCTACACCCAGCGTTTCAGGAGGTC
GAGGCGGTTTCGCCCCCGTGCCTCGTTTGCCAGTTTTAATACCTATGCCT
TGTATGTGCGGGACACGCTGCGGCCCGGGATGCGGGTACGGATGCTGGAG
AATTACGAGGAGATCGCTGCTGTTTATGAGGGCCAGTTCCGACAGAGCAA
TGATGGCGTTCCCCCAGCGCAGGTATGGGCTCTACAGACTGTGACACTGA
ATTTTCATTCTGGGTGAGGCATCCAATACACACTGGGCATTCTATACTGC
GGCTCAGTTAAGGTCCAAAGGACACGGAGCCCTTGGAATATGGGAGCAAA
GGTGTGTCAGACCCAAGAAGAAACCCATGGATTAGAATTTGGAAGATGGG
CTTTCTGAGGCCAGATGGAAGTACTGAGCCATGGTATCTAAGACAGAGAG
GATCCAGGCCGTGGTAGGATGCTTGTAATCCCAGAGGTAGAGAGAGGCAG
AAAGATAGGGAGTTCAAGGTCAGCCATGGCCACATAGCA

CACGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTTCATATCGGGGGNGA
ACTATAGAAGGATTTCAGAAATTCCCCAAAGAATGAGGTTTTACACACAG
ACATCATGAAAGGGTCGGGTGAGCCCCAGCCAGATCTCCAGCTCACCAAG
AGCCTAGAGAAAACCTTTAAGAACATCCTGGAACTCAAGAACTCGGGGCG
GCCGCCAAGCGACCCTACGGCCAGCGGTGCGGCGGACCTGGACTTCCCCA
GCTTTTCTCCAATGGCTTCGCAGGAAAACTGCCTAGAAAAATTCATCCCG
GACCACAGTGAAGGCGTTGTAGAAACGGACTCCATTTTAGAAGCAGCTGT
AAATAGTATTCTAGAGTGTTAATAGCAGCCGTCCTCCTCCAGACCCTGCC
CCGGACCAGTTACACTCTCTCCCAGCAAAGCAAATGGAAACGGCTCCCGT
CTGTCTCCAGCCTGCTTGGTCCTCCATCACAGGTTATCCTTTCTAATCTC
ACCCTGTTCTTTTGAAGAGCAATACATGTCGTCATGGCTGCGGGGAGACC
CCTCAGTACACCCACCTCTCTCTAGAAAGCAGTCCGATAGGCCCTCCACA
TTTCAAGTGTTATGAAAGCGCTTACGGCCATTGTTGTTCGTTAATTTGTT
TTGTGGTTTGTTTCTTAGCACTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_p24.b1 MSMg01no132_p24.b1 CHROMAT_FILE:
MSMg01no132_p24.b1 PHD_FILE: MSMg01no132_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:41 2005
         (597 letters)



>mm_chr17_46789646_46790642
          Length = 997

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgatctctgagctggtgcaggccatgcgctgggacggggcctcatgcagaccagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctctgatctctgagctggtgcaggccatgcgctgggacggggcctcaagcagaccagaga 260

                                                                       
Query: 61  gttcttcctcctccaccttccagcctcggccagcacagttccgcccctacacccagcgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttcctcctccaccttccagcctcggccagcacagttccgcccctacacccagcgtt 320

                                                                       
Query: 121 tcaggaggtcgaggcggtttcgcccccgtgcctcgtttgccagttttaatacctatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggaggtcgaggcggtttcgcccccgtgcctcgtttgccagttttaatacctatgcct 380

                                                                       
Query: 181 tgtatgtgcgggacacgctgcggcccgggatgcgggtacggatgctggagaattacgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatgtgcgggacacgctgcggcccgggatgcgggtacggatgctggagaattacgagg 440

                                                                       
Query: 241 agatcgctgctgtttatgagggccagttccgacagagcaatgatggcgttcccccagcgc 300
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatcgctgctggggatgagggccagttccgacagagcaatgatggcgttcccccagcgc 500

                                                                       
Query: 301 aggtatgggctctacagactgtgacactgaattttcattctgggtgaggcatccaataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtatgggctctacagactgtgacactgaattttcattctgggtgaggcatccaataca 560

                                                                       
Query: 361 cactgggcattctatactgcggctcagttaaggtccaaaggacacggagcccttggaata 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 cactgggcattctatactgcggctcagttaagttccaaaggacacggagcccttggaata 620

                                                                       
Query: 421 tgggagcaaaggtgtgtcagacccaagaagaaacccatggattagaatttggaagatggg 480
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tgggagcaaaggtgcgtcagacccaagaagaaaccgatggattagaatttggaagatggg 680

                                                                       
Query: 481 ctttctgaggccagatggaagtactgagccatggtatctaagacagagaggatccaggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttctgaggccagatggaagtactgagccatggtatctaagacagagaggatccaggcc 740

                                                                    
Query: 541 gtggtaggatgcttgtaatcccagaggtagagagaggcagaaagatagggagttcaa 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggtaggatgcttgtaatcccagaggtagagagaggcagaaagatagggagttcaa 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_p24.g1 MSMg01no132_p24.g1 CHROMAT_FILE:
MSMg01no132_p24.g1 PHD_FILE: MSMg01no132_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:41 2005
         (527 letters)



>mm_chr17_46937570_46938496
          Length = 927

 Score = 1019 bits (527), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccccaaagaatgaggttttacacacagacatcatgaaagggtcgggtgagccccagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tccccaaagaatgaggttttacacacagacatcatgaaagggtcgggtgagccccagcca 668

                                                                       
Query: 61  gatctccagctcaccaagagcctagagaaaacctttaagaacatcctggaactcaagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gatctccagctcaccaagagcctagagaaaacctttaagaacatcctggaactcaagaac 608

                                                                       
Query: 121 tcggggcggccgccaagcgaccctacggccagcggtgcggcggacctggacttccccagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tcggggcggccgccaagcgaccctacggccagcggtgcggcggacctggacttccccagc 548

                                                                       
Query: 181 ttttctccaatggcttcgcaggaaaactgcctagaaaaattcatcccggaccacagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttttctccaatggcttcgcaggaaaactgcctagaaaaattcatcccggaccacagtgaa 488

                                                                       
Query: 241 ggcgttgtagaaacggactccattttagaagcagctgtaaatagtattctagagtgttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ggcgttgtagaaacggactccattttagaagcagctgtaaatagtattctagagtgttaa 428

                                                                       
Query: 301 tagcagccgtcctcctccagaccctgccccggaccagttacactctctcccagcaaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagcagccgtcctcctccagaccctgccccggaccagttacactctctcccagcaaagca 368

                                                                       
Query: 361 aatggaaacggctcccgtctgtctccagcctgcttggtcctccatcacaggttatccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatggaaacggctcccgtctgtctccagcctgcttggtcctccatcacaggttatccttt 308

                                                                       
Query: 421 ctaatctcaccctgttcttttgaagagcaatacatgtcgtcatggctgcggggagacccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctaatctcaccctgttcttttgaagagcaatacatgtcgtcatggctgcggggagacccc 248

                                                          
Query: 481 tcagtacacccacctctctctagaaagcagtccgataggccctccac 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcagtacacccacctctctctagaaagcagtccgataggccctccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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