Query= MSMg01no136_m13.b1 MSMg01no136_m13.b1 CHROMAT_FILE:
MSMg01no136_m13.b1 PHD_FILE: MSMg01no136_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:16 2005
(629 letters)
>mm_chr17_62826742_62827770
Length = 1029
Score = 1154 bits (597), Expect = 0.0
Identities = 618/625 (98%)
Strand = Plus / Plus
Query: 5 gaattcagtgtgcacacttagttagcaccctctatacttactagtaatataaatctagct 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtgcagacttagttagcaccctctatacttactagtaatataaatctagct 264
Query: 65 agattttgtaaattttcagttttctagactcactgagcagttttagtaacttatggaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 agattttgtaaattttcagttttctagactcactgagcagttttagtaacttatgtaagt 324
Query: 125 atttttgtttggcccaagttatatttgtagctgaagaagatataatcatatgattctgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttttgtttggcccaagttatatttgtagctgaagaagatataatcatatgattctgac 384
Query: 185 caaatagaaggttagaattataactagccaccataattaccaaagagtatattaaggaaa 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 caaatagaaggttagaattataactagccaacataattaccaaagagtatattaaggaaa 444
Query: 245 aagcttctaccgataatctaaggccaactaacattttctagtatcatttgcaattctatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcttctaccgataatctaaggccaactaacattttctagtatcatttgcaattctatt 504
Query: 305 cagttatggtctttaggcctgtgttagttggtttatagagatagatcgccaactcttaaa 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagctatggtctttaggcctgtgttagttggtttatagagatagatcgccaactcttaaa 564
Query: 365 aagcattacccagaaagtaatattgaacaggctcattagctcacagtatcacccacgagt 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagcattagccagaaagtaatattgaacaggctcattagctcacagtatcacccacgagt 624
Query: 425 tgcataactgataaagagggctcagaaaatcagatggcagcctctcaggacatccttcct 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 tgcataactgataaagagggctcagaaaatcagatggcagtctctcaggacatccttcct 684
Query: 485 ctagagttgctgtttcctgtttatgttctgagccttcccctgagctagctgatgggagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctagagttgctgtttcctgtttatgttctgagccttcccctgagctagctgatgggagga 744
Query: 545 aagctgtgtggaatatgtgcagtgtgactcacaccaagtttggggcctttaaaaatagaa 604
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 aagctgtgtggaatatgtgcagtgcgactcacaccaagtttggggcctttaaaaatagaa 804
Query: 605 ccacagctttctgattggacccaag 629
|||||||||||||||||||||||||
Sbjct: 805 ccacagctttctgattggacccaag 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_m13.g1 MSMg01no136_m13.g1 CHROMAT_FILE:
MSMg01no136_m13.g1 PHD_FILE: MSMg01no136_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:16 2005
(597 letters)
>mm_chr17_62969528_62970524
Length = 997
Score = 1013 bits (524), Expect = 0.0
Identities = 553/570 (97%), Gaps = 12/570 (2%)
Strand = Plus / Minus
Query: 1 actgatagatagtcgccaagattttacaaaaggatttttgacaacacagttcaacacccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actgatagatagtcgccaagattttacaaaaggatttttgacaacacagttcaacacccg 499
Query: 61 ggccggtgaggacatgctgaggtgtctatgtctgacactttgggctgatttctctggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggccggtgaggacatgctgaggtgtctatgtctgacactttgggctgatttctctggtgc 439
Query: 121 tgtttctggcccaagcctttcaagggtaaaggtaacctgcatgcccagcctggctgcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtttctggcccaagcctttcaagggtaaaggtaacctgcatgcccagcctggctgcttc 379
Query: 181 tctggggaattcgtagttttgtcttttgtttgcccctaatttaatagcatgctcacaaac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctggggaattcgtagtttcgtcttttgtttgcccctaatttaatagcatgctcacaaac 319
Query: 241 tctgaatggatcagaaataaacaaatgagctcagtggtcttgcttttcaaaagcaagagg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 tctgaatggatcagaaataaacaaatgagctcagtggtcttgcttttcaaaagcaacagg 259
Query: 301 ctctttactgctgtttgtcattctctaagtgttcccacataaccaatgtgctcatgtgca 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 ctctttactgctgtttgtcattctctaagtgttcccacataacgaatgtgctcatgtgca 199
Query: 361 tacatgcacacacacacacacacacacacacacacacacacacatactcatacagacaga 420
||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 198 tacatgcacacacacacacacacgcacacaca------------tactcatacagacaga 151
Query: 421 cagacaaacagacagacagacaaagtaaaaaataaattagtattgtgttgaggaaggagt 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 150 cagacaaacagacagacagacaaattaaaaaataaattagtattgtgttgaggaaggagt 91
Query: 481 aaagcaaattggtatccgccttggtgaaataatattctagatctgtaagtttagaacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 aaagcaaattggtatccgccttggtgaaataatattctagatctgtaagtttagaacatg 31
Query: 541 tgcatttccaaagctctatgtgccctctaa 570
||||||||||||||||||||||||||||||
Sbjct: 30 tgcatttccaaagctctatgtgccctctaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
