BAC Information

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BAC

Clone NameMSMg01-136P11
Chromosome17 (Build37)
Map Location 46,648,248 - 46,784,020
singlet/doubletdoublet
Overlap geneParc, Srf, Ptk7, Klc4, Mrpl2
Upstream geneAars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355
Downstream geneCul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136P11.T7 (MSMg01no136_p11.b1)MSMg01-136P11.TJ (MSMg01no136_p11.g1)
ACCAG343025AG343026
length725717
length of high quality
(start - end)		674 (52 - 725)636 (80 - 715)
definitionCHROMAT_FILE: MSMg01no136_p11.b1 PHD_FILE: MSMg01no136_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:30 2005CHROMAT_FILE: MSMg01no136_p11.g1 PHD_FILE: MSMg01no136_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,648,248 - 46,648,917)(46,783,440 - 46,784,020)
sequence
NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCAACTACCTCTCTACTGACACCTCCTGGTAAGGAGAA
ACAGTGCTCGTCAGACATGAAGCAAAGAAGGAGAGAGCAGAGAGGCAGGC
AGAAGAGGAGCCTGGGGGGGGGTGCCGGGGGCGACACAAAAGAGGCACCT
CTGATTGGTTAAAATTCAGCAGCAGCCACATCTGTACAGTGGACACGTGC
AGGGTCTGGTCCCCAAACTGCAGCTCAGCCCGGCCCAGCCATGTCCACTG
AAGTCGCCGGTGTGGTCCTATGTCCAAGACTGGGCAGTTCTGGCCTAGGG
AAGTGTCAAGGAGATGGGGTACAGTCAAGGAGGAGGGGAGTAAAGGGTGG
CAGTGTAAGAAAAATACAAACAGCATTTTCATGTTTGTGAGTTGTAATGA
TACTGGTATATATTTTAAAAACCTCACCGACCATCTTTGGAGTATTCTAA
CGAATCAATTCAGAACTTTAAAAACAAACAAACAAACAAAAATAGCTGTC
AGGTGTGGTAGTAAATGCCTTTAGTCCCAGCACTTAGGAGGCAGAGTCAT
GAGTCTCTCTGTGAGTTCAAAGCTAGCCTGGTCTATACAGAGCGACCCAG
GCTAGCCAGGGCTACATAGTTAAAAAAAAAAATCAAAAGATATCCAAAAC
AAAAACATATCTAGAGGGGAAAGGG

NNNNTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTCCAGAGCGGGTAAAC
TCCACACACCTATCACCACCATCAGCAGTGGTGCCTTTTGCCCAATGCAC
GGTTTCAGGAATTTTCGAGTATGAATGGAAATGATTATTTTGCTTTTCCA
CTGGCTGTAGACTAAGTGTTTGGTTTAGCTTGGATTATAAAATATACATT
CGCTAAATTCTGCCATGCTCAGCCTGAGAAATGCAGAGAAGCAAGATCAA
TAATTTCTTTTCTTTTCTTTCTTTCTTTTTTTTTGTGTGTGTGATTCACC
ATTGCCCACTACAGACCCACTGTTCGACAGTCCCTAATATCAGCAATAAC
CCAGTCGTACATTAAAACAGTTAAGAGCACTGGTTCTGGGAGGTAGAGGA
AGCGCATAGAATGAGCGAGGCTCTAGGTTTAATCTGCAGTAGCAGGGCAA
GTTGCGAAGCCAGTCTGTCTAGCCCCAGAAGGTGTAAGACTGCTGACCAG
GTTTCTCATCCCCAAAATGTGCATAAGAACTCTCAGGAGGTCGGTTAATT
CAATCCTCTTCTCTGCCTGATTTACGGCTGGCACCTTAATGTTACTTCTG
CAACCTGTTTAGTAAAGGCTTGCAAAAGCACTTGGAAGCCCGTATCTGAG
ATCGGGATTGACGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_p11.b1 MSMg01no136_p11.b1 CHROMAT_FILE:
MSMg01no136_p11.b1 PHD_FILE: MSMg01no136_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:30 2005
         (674 letters)



>mm_chr17_46648044_46649114
          Length = 1071

 Score = 1212 bits (627), Expect = 0.0
 Identities = 660/673 (98%), Gaps = 6/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcaactacctctctactgacacctcctggtaaggagaaacagtgctcgtcaga 64
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaacaaggtctctactgacacctcctggtaaggagaaacagtgctcgtcaga 264

                                                                       
Query: 65  catgaagcaaagaaggagagagcagagaggcaggcagaagaggagcctgggggggggtgc 124
           |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||
Sbjct: 265 catgaagcaaagaaggagagagcagag--gcaggcagaagaggagcctgggggggg-tgc 321

                                                                       
Query: 125 cgggggcgacacaaaagaggcacctctgattggttaaaattcagcagcagccacatctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cgggggcgacacaaaagaggcacctctgattggttaaaattcagcagcagccacatctgt 381

                                                                       
Query: 185 acagtggacacgtgcagggtctggtccccaaactgcagctcagcccggcccagccatgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acagtggacacgtgcagggtctggtccccaaactgcagctcagcccggcccagccatgtc 441

                                                                       
Query: 245 cactgaagtcgccggtgtggtcctatgtccaagactgggcagttctggcctagggaagtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 cactgaagtcgccggtgtggtcctatgtccaagactgggcagttctgacctagggaagtg 501

                                                                       
Query: 305 tcaaggagatggggtacagtcaaggaggaggggagtaaagggtggcagtgtaagaaaaat 364
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 502 tcaaggagatggggtacagtcaaggaggaggggagtaaagggtagcagtgtaagaaaaat 561

                                                                       
Query: 365 acaaacagcattttcatgtttgtgagttgtaatgatactggtatatattttaaaaacctc 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaaacagtattttcatgtttgtgagttgtaatgatactggtatatattttaaaaacctc 621

                                                                       
Query: 425 accgaccatctttggagtattctaacgaatcaattcagaactttaaaaacaaacaaacaa 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 accgactatctttggagtattctaacgaatcaattcagaactttaaaaacaaacaaacaa 681

                                                                       
Query: 485 acaaaaatagctgtcaggtgtggtagtaaatgcctttagtcccagcacttaggaggcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acaaaaatagctgtcaggtgtggtagtaaatgcctttagtcccagcacttaggaggcaga 741

                                                                       
Query: 545 gtcatgagtctctctgtgagttcaaagctagcctggtctatacagagcgacccaggctag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtcatgagtctctctgtgagttcaaagctagcctggtctatacagagcgacccaggctag 801

                                                                       
Query: 605 ccagggctacatagttaaaaaaaaaaa---tcaaaagatatccaaaacaaaaacatatct 661
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 802 ccagggctacatagttaaaaaaaaaaaaaatcaaaagatatccaaaacaaaaacatatct 861

                        
Query: 662 agaggggaaaggg 674
           |||||||||||||
Sbjct: 862 agaggggaaaggg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1071
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1061
Effective search space:   704504
Effective search space used:   704504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_p11.g1 MSMg01no136_p11.g1 CHROMAT_FILE:
MSMg01no136_p11.g1 PHD_FILE: MSMg01no136_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:30 2005
         (636 letters)



>mm_chr17_46782985_46784020
          Length = 1036

 Score = 1046 bits (541), Expect = 0.0
 Identities = 571/581 (98%), Gaps = 3/581 (0%)
 Strand = Plus / Minus

                                                                        
Query: 59   ttgcccaatgcacggtttcaggaattttcgagtatgaatggaaatgattattttgctttt 118
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ttgcccaatgcacggtttgaggaattttcgagtatgaatggaaatgattattttgctttt 977

                                                                        
Query: 119  ccactggctgtagactaagtgtttggtttagcttggattataaaatatacattcgctaaa 178
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 976  ccactggctgtagactaagtgtttggtttagcttgaattataaaatatacattcgctaaa 917

                                                                        
Query: 179  ttctgccatgctcagcctgagaaatgcagagaagcaagatcaataatttcttttcttttc 238
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 916  ttctgccatgctcagcctgagaaatgcagagaagcaagatcagtaatttcttttcttttc 857

                                                                        
Query: 239  tttctttcttt-tttt-t-tgtgtgtgtgattcaccattgcccactacagacccactgtt 295
            ||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tttctttctttcttttgtgtgtgtgtgtgattcaccattgcccactacagacccactgtt 797

                                                                        
Query: 296  cgacagtccctaatatcagcaataacccagtcgtacattaaaacagttaagagcactggt 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  cgacagtccctaatatcagcaataacccagtcgtacattaaaacagttaagagcactggt 737

                                                                        
Query: 356  tctgggaggtagaggaagcgcatagaatgagcgaggctctaggtttaatctgcagtagca 415
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  tctaggaggtagaggaagcgcatagaatgagcgaggctctaggtttaatctgcagtagca 677

                                                                        
Query: 416  gggcaagttgcgaagccagtctgtctagccccagaaggtgtaagactgctgaccaggttt 475
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  gggcaagttgcgaagcccgtctgtctagccccagaaggtgtaagactgctgaccaggttt 617

                                                                        
Query: 476  ctcatccccaaaatgtgcataagaactctcaggaggtcggttaattcaatcctcttctct 535
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 616  ctcatccccaaaatgtgcataagaactctcaggaggtcggttaattcagtcctcttctct 557

                                                                        
Query: 536  gcctgatttacggctggcaccttaatgttacttctgcaacctgtttagtaaaggcttgca 595
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  gcctggtttacggctggcaccttaatgttacttctgcaacctgtttagtaaaggcttgca 497

                                                     
Query: 596  aaagcacttggaagcccgtatctgagatcgggattgacgga 636
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  aaagcacttggaagcccgtatctgagatcgggattgacgga 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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