GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGTCCGGACTTCCCTCCTTCCCAGTGGTTCACACCAGCA
GGCAAACCCATATAGCTTCTAAAAACAGGGATATCTCTAGAGCTACTTAT
CACTTTTGTAGCAGCATTGTATAGGAGCAGTGTGGTTTGATCTCCAAACT
GTCAGGGACTACCTTTGGTTGAAATAGGGACTTAAGCAGAAGGATATAAA
CACAAAGCATACCTTGGTCTAATAGCTGTGATCCGTAATTTATGTAGCCT
CTGACAATCATTTCTCTAACCCAGCGTGCCCTATGGGGTAACTCAGAGCT
GTGTATACTCATATTGATCTTGAAGTTGAAAGAGTTAGTTCACAATCACT
GCCATTGACAAGGGTTCTTACAGATCATTAACCACTAGATTATGTGGCAC
AGTTCATTAAAATTCTGTCTCATCCTCTGCATTTGTCAACAGGCTTCAGG
GCTTTTATCACTTTGTGACTCTTGTAGAGATTTTCCTCCAGAGTGTGCAG
TTTTTCTTCTCCTCTTTTCCTCATGGAAAAAAGCATGAACTAATTTGTCC
CAAGATGAATAATCATTTAAATGCAAATGCAAATGAAATACCAACTAAGA
ATCACAGGTTTGGAGACACACACCCCTGTCCCTCTGCTCACCCTGCCCCC
TTCTTATTTGTGAN

NCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCCAGGACTATTTCTTATTGCTG
ACATGCCTTTCCTGCCATTATTACATAGTCTAATGAATCCTGGACATCAG
CCCACCCTATTGGAAAGACCTTCTGCAGAGTCAATATGAAGATGTACTTT
TACGAAGTAATGCTATGTGGAAGAATTGATGATTTTGTAACTCCTGATTT
TGATTTATAGGATTCCCAAAATTTAAAAAGTAATCTCAAGGTAGCTTTTG
AATAAAATCTGCAAGTAGAGCTCTGTAAACCTTCATGTGTTATGGGCTAA
TAACACTAGGAAAAAATAGCTTGGAACAAATTTACAATAACAGAAAATAT
TCCTTCTAGGTTAAGAATAAGGCCACTATATGGTAGCTAAAGGCGATAAA
CTGTGAATGGGCAGTTTATTGTAGGTGGAAGGACAGAAAATAAATGCTAG
ACTAGTCTTCCTGTACAAAACTTCAAAATAATAAGAAACTATACAGATGA
ATTTACTCTTGATAAAACCATACTAACTTATGATGCAAAACTAATCGCTT
TAAGCTTATAATGAACTTATGGAGATAATGAATGTTTAGTGAGGTACTAG
TCTTAAGGTAAACACTTAGAAACAATTCTGCTGTAACTTTTTAAGCCTTA
AAAAGGATGGACC

Query= MSMg01no139_a17.b1 MSMg01no139_a17.b1 CHROMAT_FILE:
MSMg01no139_a17.b1 PHD_FILE: MSMg01no139_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:18 2005
         (650 letters)



>mm_chr17_58849876_58850919
          Length = 1044

 Score = 1180 bits (610), Expect = 0.0
 Identities = 636/646 (98%), Gaps = 6/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggacttccctccttcccagtggttcacaccagcaggcaaacccatatagcttctaaaaac 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 ggacttccctccttcccagtggttcacaccagcaggcaaacccatatagcttctaaaatc 264

                                                                       
Query: 65  agggatatctctagagctacttatcacttttgtagcagcattgtataggagcagtgtggt 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggatatctctagagctatttatcacttttgtagcagcattgtataggagcagtgtggt 324

                                                                       
Query: 125 ttgatctccaaactgtcagggactacctttggttgaaatagggacttaagcagaaggata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgatctccaaactgtcagggactacctttggttgaaatagggacttaagcagaaggata 384

                                                                       
Query: 185 taaacacaaagcataccttggtctaatagctgtgatccgtaatttatgtagcctctgaca 244
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 taaacacaaagcaaaccttggtctaatagctgtgatccataatttatgtagcctctgaca 444

                                                                       
Query: 245 atcatttctctaacccagcgtgccctatggggtaactcagagctgtgtatactcatattg 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atcatttctcta-cccagcgtgccctatggggtaactcagagctgtgtatactcatattg 503

                                                                       
Query: 305 atcttgaagttgaaagagttagttcacaatcactgccattgacaagggttcttacagatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcttgaagttgaaagagttagttcacaatcactgccattgacaagggttcttacagatc 563

                                                                       
Query: 365 attaaccactagattatgtggcacagttcattaaaattctgtctcatcctctgcatttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attaaccactagattatgtggcacagttcattaaaattctgtctcatcctctgcatttgt 623

                                                                       
Query: 425 caacaggcttcagggcttttatcactttgtgactcttgtagagattttcctccagagtgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caacaggcttcagggcttttatcactttgtgactcttgtagagattttcctccagagtgt 683

                                                                       
Query: 485 gcagtttttcttctcctcttttcctcatggaaaaaagcatgaactaatttgtcccaagat 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 gcagtttttcttctcctcttttcctcatggaaaaa-gcatgaactaatttgtcccaagat 742

                                                                       
Query: 545 gaataatcatttaaatgcaaatgcaaatgaaataccaactaagaatcacaggtttggaga 604
           ||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||
Sbjct: 743 gaataatcatttaaatgcaaatgcaaatgaaatac-aa---agaatcacaggtttggaga 798

                                                         
Query: 605 cacacacccctgtccctctgctcaccctgcccccttcttatttgtg 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cacacacccctgtccctctgctcaccctgcccccttcttatttgtg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1044
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1034
Effective search space:   661760
Effective search space used:   661760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)