BAC Information

Click to search

BAC

Clone NameMSMg01-141B05
Chromosome17 (Build37)
Map Location 59,009,782 - 59,010,569
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141B05.T7 (MSMg01no141_b05.b1)MSMg01-141B05.TJ (MSMg01no141_b05.g1)
ACCAG346045AG346046
length1,3251,218
length of high quality
(start - end)		158 (94 - 251)788 (86 - 873)
definitionCHROMAT_FILE: MSMg01no141_b05.b1 PHD_FILE: MSMg01no141_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:04 2005CHROMAT_FILE: MSMg01no141_b05.g1 PHD_FILE: MSMg01no141_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTCCTNTNNNNNTACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATTTACAGTTTCATTTCCTATAAATTTCACTTTGCCC
CTTCCCTTCTTTTCTTCATTCCCTTGCAAAATGTTTGTGGACATAAACAC
AATCTTAGGATTTTAGTATGGCATATTTGTTTGTGTTTGTGTGTGTGTGT
GTGTGTGTGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGA
GAGNGNGNNNGNGNGGGNGNGGGGGNNNNNGGNNNGGGGGGAAANGGGNN
GNGGGGAAGAANGAAGAGAGGAANGNGNGNAAAGAAAAGATTTTTTGANG
AGAAGGGAAAGGGAGAAAAAGAAAAAAGAAAAGAGAAAAAGAAAGGAAAG
AAGAAAAAAAGTTTTTTTTTTTAAGAGAAAAGAAAAAAAGAAATGGAAAG
GGGGAAAAAAAACGCCCCCATTTTTTTTTCCCCCCCTCTATTTGATTTAT
TTCTCTCCTTATTAATAATTATTTCGATCTTCTATTTTTCTCGTATTCTC
CTACATTTATTACTCTTTTTTTTCTTGTTTCTATCCTTCTCCTTATCTCT
CCTTTTTGTTTTTTTTTCTCGTATTTATCATTCTCTCCTTCCTCTCTCTT
ATTTCTTTTTTCCCCTCTCTTCTCTTCTTTATTCTCTATTCTCTTTTTCT
ATCCCTTATCTTCCTCTTCTTTTCTTATTTCCTTTTTTACTCTCTTCTCC
TTTTTCTTTCTCTTCTCTGTCTCTTTTCTTTCTTTAATTCTTTTCCTTCT
TCTTTATTTTCCTTCCTCACTCTTCTATTTTCCTCTCCTCATCCTTTTTC
CCCTCCACTTCTTTTTTTTTTTTTTCTCAACACTTCCTCCCCTCTTTCTC
TTTTTTTATTTCTTCTCCTTTTTACATTCCACTTTTTCTTTTTCTTTCTT
CTTTTCTCTTTCTTTTTTTTTTATTTTCCTTTTTCTTTCTCCTTCTTTTC
TTCTCTTTCTTCTTCCTTTTTATTTTTTTTCTTTTCTCCTATTCCCCTCT
TCTTTTTCTTTCCTTTCTCATCTCTCTTTCTTTTTTCCTTATCTATCGTT
ACCTCCTTCTCTTCCTTCTTTTCTCTTTTTCACTTACTACCTCTTCTCTT
CTCTTTCTTCTCTTTTCTCTTTCCCTTCTTCTATTCTTCCTTCTTTCTCT
CTCTTTCTTTTTCTTCTTTCATATCTTCCTTCCCTTCTTTATTCTATATT
GCTCTCTCTTTCTCTTTCTCTTTTCTCTTTTCTTCTTCTTTCTTTATCTN
TTTATTATCTTTCCTTGTCTTTCTT

NCCAGTTTTTTTTNTTAGATGCGTAGCGGCXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGCTTATTTAAGTGTTTG
TTCAGGACAGTGGAGTGGCTACTGCAGAAACTGAGTATTAAAAGCACTCA
TTTACTCTGGGATACCTTCCTAGAGACTAACATGATGTTAGGTGTCTTGC
TCCCTGGCCTGCGTTACACCATGCACATGTACCCAAAGTCCATAGTTAAC
TGCAAGACTAGCTGATGCTGCTTCTATTGGGTCCCTGAAATCACCAACAT
CTCTTCTGTCTCTTTCTTTCTCTCCTTCTTTTGAGTCTCTTATTTCATAA
GTGGCTTGGTTAAACTCATCTAAATTATACAGTATTCATACTTGCGTATT
ACATATGCACAATACACATATCCAAACATATTCAACATTCATGGGAGTTT
TATTTTTGCTGTACCACATGGATTATGGATTTAAACTAAAATGCACATGG
AAACCTTACTACATATGACACTGGAGGTAGTCCCATCTTTCTTTGTTGCT
TGTTTCAAAATGTGTAAAATGACAGCAATGACATATTGGAATCCTTGAAA
TTCACTAAGTTAAAATATATAAAACACCCAGCATATACATATTTAAAATT
CATACACAGACATATATGTATTTGAAGAACTGTACAGTGCAGCCTTTCTA
AAGATAAGCAATGCCTGTACCGTGACTGCCCTCTTCTGGATGGCAGTGGA
GCCTCAGGCTTTTCTTTCTCCAAGCATGGTATTTCTAGAGAAAAATCTAA
TTTCTTAGGAACCACTGTAACTGTATGACAGTCAAAGTGAGGGACACAAG
TATCTCTTTAGAATATTGCATTCCTGGCATGACAGTTACTCTTGAAATAG
GAGTAAGCTAAGTGTCTGCCATATAGCATCAGGAAAGTAGAGGCTGGGGA
TCACCGAATCCAAACTATTGTGGAAAAAACCCATTGACAAAAAAAAAACT
AAAAGCCCTTTCCCCTTTGAACTTTCCTGAACCGAAAAAACATGGGGGAA
AAAAACTGAAATTACCCAGTCCCCAAAAAAAAGGGGTTGGCTTTTTGTGA
GTGCCCAAAAAGGGCCCTTGAAATTTATGGGCCCCCGGTTTTCACGGGGC
TTCTTCCCCAAAAAATTGGCGAAATCTTATATTCCCCGGGGGGGCTCGCC
CTTCTTTTTATAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_b05.g1 MSMg01no141_b05.g1 CHROMAT_FILE:
MSMg01no141_b05.g1 PHD_FILE: MSMg01no141_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:04 2005
         (788 letters)



>mm_chr17_59009582_59010769
          Length = 1188

 Score = 1462 bits (756), Expect = 0.0
 Identities = 780/788 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttaagtgtttgttcaggacagtggagtggctactgcagaaactgagtattaaaagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttatttaagtgtttgttcaggacagtggagtggttactgcagaaactgagtattaaaagc 260

                                                                       
Query: 61  actcatttactctgggataccttcctagagactaacatgatgttaggtgtcttgctccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcatttactctgggataccttcctagagactaacatgatgttaggtgtcttgctccct 320

                                                                       
Query: 121 ggcctgcgttacaccatgcacatgtacccaaagtccatagttaactgcaagactagctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcctgcgttacaccatgcacatgtacccaaagtccatagttaactgcaagactagctga 380

                                                                       
Query: 181 tgctgcttctattgggtccctgaaatcaccaacatctcttctgtctctttctttctctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgcttctattgggtccctgaaatcaccaacatctcttctgtctctttctttctctcc 440

                                                                       
Query: 241 ttcttttgagtctcttatttcataagtggcttggttaaactcatctaaattatacagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttttgagtctcttatttcataagtggcttggttaaactcatctaaattatacagtat 500

                                                                       
Query: 301 tcatacttgcgtattacatatgcacaatacacatatccaaacatattcaacattcatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatacttgcgtattacatatgcacaatacacatatccaaacatattcaacattcatggg 560

                                                                       
Query: 361 agttttatttttgctgtaccacatggattatggatttaaactaaaatgcacatggaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttttatttttgctgtaccacatggattatggatttaaactaaaatgcacatggaaacc 620

                                                                       
Query: 421 ttactacatatgacactggaggtagtcccatctttctttgttgcttgtttcaaaatgtgt 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactacatatgacactgggggtagtcccatctttctttgttgcttgtttcaaaatgtgt 680

                                                                       
Query: 481 aaaatgacagcaatgacatattggaatccttgaaattcactaagttaaaatatataaaac 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 aaaatgacagcaatgacatattggaatccttgaagttcactaagttaaaatatataaaac 740

                                                                       
Query: 541 acccagcatatacatatttaaaattcatacacagacatatatgtatttgaagaactgtac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acccagcatatacatatttaaaattcatacacagacatatatgtatttgaagaactgtac 800

                                                                       
Query: 601 agtgcagcctttctaaagataagcaatgcctgtaccgtgactgccctcttctggatggca 660
           ||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||
Sbjct: 801 agtgcagcctttctaaagataagcaatgaatgtactgtgactgccctcttctggatggca 860

                                                                       
Query: 661 gtggagcctcaggcttttctttctccaagcatggtatttctagagaaaaatctaatttct 720
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtggagcctcaggcttttccttctccaagcatggtatttctagagaaaaatctaatttct 920

                                                                       
Query: 721 taggaaccactgtaactgtatgacagtcaaagtgagggacacaagtatctctttagaata 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 taggaaccactgtaactgtatgacagtcaaagtgagggacacaagtatctctttagaata 980

                   
Query: 781 ttgcattc 788
           || |||||
Sbjct: 981 ttacattc 988


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 788
Length of database: 1188
Length adjustment: 10
Effective length of query: 778
Effective length of database: 1178
Effective search space:   916484
Effective search space used:   916484
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |