BAC Information

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BAC

Clone NameMSMg01-141J04
Chromosome17 (Build37)
Map Location 60,124,711 - 60,227,918
singlet/doubletdoublet
Overlap genenone
Upstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141J04.T7 (MSMg01no141_j04.b1)MSMg01-141J04.TJ (MSMg01no141_j04.g1)
ACCAG346410AG346411
length1,2101,214
length of high quality
(start - end)		746 (88 - 833)779 (88 - 866)
definitionCHROMAT_FILE: MSMg01no141_j04.b1 PHD_FILE: MSMg01no141_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005CHROMAT_FILE: MSMg01no141_j04.g1 PHD_FILE: MSMg01no141_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,124,711 - 60,125,456)(60,227,140 - 60,227,918)
sequence
NCCATTCTTNNNNNTACATTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCTACCTGACTTCCCTTCCTTTAGAAAATGCTGATGGTGATG
ACATTTTATTCTAACAGCATAAAGCAAACTAAAACGCCCTTCTTTTTGTT
TTTAAAGACTAAATTACATGATAGTAACTAGATAAAAATGAAGTCACGTT
AATATTAATAATATAATAATCACAGAAATTTTAATCTTAACCCAAATAAT
TTTCTTTGGCAAAATATTTTTAGGGGATGGAGAGATTACTCAGTGGTTAA
TAGCATTGGCTGGTCATCTAAAAGGACCAATTCAAGTCTCAGCAACTAAA
TGGTTAAACAAGTTTAGTCCTTAACTACAATTTTCAGGAACCAATGCCCT
GTTCTGAACTCTAAAGGCAATGGGCATACACACAGAACATAGACAAACAT
GCAGAATAAACACCCATTCCCATAAAATAATAAATTAAAAATTAAAATCT
TTTGCTCTAAGTTTTTAGTTTGGTCTATGTGCTTGGGATTCTGGGTTGGG
TGGGCAAGGCATGGCATGTACACCTTTGGAAGTCAGATTTCCACTTGCTG
GAGTACAGAAATACGCTCTCTCCTTCCAAACGGTAGGTCCTGGGTTTCAA
CTCGGGTCATCAGGCTTTGTGGTAGGTACCTTTCACGTTCAGCATCTCCA
GCTGCCCTTGAGTCAAATAATGGCCTATGTTTTCTAATCAGCTCAATTCT
AGAACCTGTACAGGGTCTCACTTCAGCAACATTAGCTGAACTTTATGCAG
AGAAGTTTTATTTTGCATTTAAATGTGGAAATGAAGAAATGAATTCAGCT
ATGTAGTCTGGAAGAAAGTAAAATCTCCATCGCAATGGTTCTTACCCTTC
CTAATGCTGGAGACCTTTAATATAATTCCGCATACTGTGATGATCTCCGC
ACCCATAAATTTACTGTTTTGCCTCCTCATAACTAATTTTTCCAACTTTT
ATGAATTGGGAAGGTAAAAATTTTTCATTAAAGAAAATCCAAAGGTGTGG
ACCTTTCCCAATGGATTGGGACCCCCCGGTTTGGAAACCCTCGGTTCCTT
AAACCCCTTTTTCCTCCCAGGGTGTCTTTTAAATTAAACAAAAAAATGTG
TTTTTCCCCGTGACTAATTCTTCTAATAATGAGGGACACCCTTATCTACT
AATTAAAAAT

NCCTTATTTNNTNNNAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAACTAGTGGGTAAAAGAAA
CCCAACTGAGAGAAGATTCTATTGGTCCATATTCTACCCTTGCTTACAAA
AGAACTGCCTAGAATAGTGCCAATAGCAGAAAGAAACACATGACCTCAGT
CTATTAAATTCTATTCTGCCTAATATTTTATAACTAGCATCAGTGAATTA
ATCTATAAATCTCCCTTGGTAATTAACAGCTCCTAACAGTGTGGGCTATG
GTCTTACACTATCGTGGTTCGGACTTTTGCAGGGCATAGGTTGACACTGT
GACTCACCTTGGAATCTAGAGCTAGTCTATCCTCTATTATAACCAGTCCT
GAGCATAATCTACCATATTCTAACCTAGGCTATTTTACCTAGAAGGTATA
TGAGTCTATAACCACCACAAAGAAGAAACAGGAAAAACTACCCTTTCTAG
GTACCCCCTGTTTCATTCTGAAAAATAAATGCAAATTTCTAAAAAGTATT
AATTGGGATTGGCCTTTTGTGCCAAAACTATGACCAGGCAACAATATGCT
TGAAGGGCTGGACTTGGGTGACATTCAATATGAAACGATAGAAATGACAT
GATACTTAGAATTAAAATAATCAATAAGTTTACAATTTCTGGAAAATAAG
CATAAGAATGCTATATTATAAATAGTAGGATGAACATACACTGCTTAAAG
ACCAAATAATGTCATATACTCAAATATCAATAACTTCAATAGACAAAGGC
TTCAATTAGATGGTCAGTCTAAAAGTTAGACCTCCAAGGTTCACGTTGAA
TGGTAGAGATCACATACCAAGGAGAGTGTTGAATGTATAACTGTAATCAT
ATACATATATGATTACAGNTAGAAAAGGAAAAAACTGTGGGTAATTGCCG
CATAAATGAATTACAAATGGTAAGGTTTTGTGCACTTTCCCAAAAGTATA
AAAAAATCCCTTTTAGTTTTACCACCGAAAAATGGATTGGGTTTGAAAAA
ACTAAAAATTTTGAACCTTAATTTAAACCCCATTAAAATGGGAAACCTGG
TTCCAAAATTTTCCGGGATTTCCGGATTGGCCCCTTAAAAGTCGACACCC
TTTAAAACCTTGGAAAAACCCCCTTTTTATTTAAAATACCCGCGCAGAAA
TATTTCCTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_j04.b1 MSMg01no141_j04.b1 CHROMAT_FILE:
MSMg01no141_j04.b1 PHD_FILE: MSMg01no141_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:07 2005
         (746 letters)



>mm_chr17_60124511_60125656
          Length = 1146

 Score = 1388 bits (718), Expect = 0.0
 Identities = 739/746 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgatggtgatgacattttattctaacagcataaagcaaactaaaacgcccttcttttt 60
           |||||||||||||||||||||||||||||| | ||||||||||||||||   ||||||||
Sbjct: 201 gctgatggtgatgacattttattctaacagtagaaagcaaactaaaacggtgttcttttt 260

                                                                       
Query: 61  gtttttaaagactaaattacatgatagtaactagataaaaatgaagtcacgttaatatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttttaaagactaaattacatgatagtaactagataaaaatgaagtcacgttaatatta 320

                                                                       
Query: 121 ataatataataatcacagaaattttaatcttaacccaaataattttctttggcaaaatat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ataatataataatcacagaaattttaatcttaacccagataattttctttggcaaaatat 380

                                                                       
Query: 181 ttttaggggatggagagattactcagtggttaatagcattggctggtcatctaaaaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaggggatggagagattactcagtggttaatagcattggctggtcatctaaaaggac 440

                                                                       
Query: 241 caattcaagtctcagcaactaaatggttaaacaagtttagtccttaactacaattttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caattcaagtctcagcaactaaatggttaaacaagtttagtccttaactacaattttcag 500

                                                                       
Query: 301 gaaccaatgccctgttctgaactctaaaggcaatgggcatacacacagaacatagacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaatgccctgttctgaactctaaaggcaatgggcatacacacagaacatagacaaa 560

                                                                       
Query: 361 catgcagaataaacacccattcccataaaataataaattaaaaattaaaatcttttgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcagaataaacacccattcccataaaataataaattaaaaattaaaatcttttgctc 620

                                                                       
Query: 421 taagtttttagtttggtctatgtgcttgggattctgggttgggtgggcaaggcatggcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagtttttagtttggtctatgtgcttgggattctgggttgggtgggcaaggcatggcat 680

                                                                       
Query: 481 gtacacctttggaagtcagatttccacttgctggagtacagaaatacgctctctccttcc 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gtacacctttggaagtcagatttccacttgctggagtacagaaatatgctctctccttcc 740

                                                                       
Query: 541 aaacggtaggtcctgggtttcaactcgggtcatcaggctttgtggtaggtacctttcacg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacggtaggtcctgggtttcaactcgggtcatcaggctttgtggtaggtacctttcacg 800

                                                                       
Query: 601 ttcagcatctccagctgcccttgagtcaaataatggcctatgttttctaatcagctcaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcagcatctccagctgcccttgagtcaaataatggcctatgttttctaatcagctcaat 860

                                                                       
Query: 661 tctagaacctgtacagggtctcacttcagcaacattagctgaactttatgcagagaagtt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tctagaacctgtacagggtctcacttcagcaacattagctgaactttatgcagagaagtt 920

                                     
Query: 721 ttattttgcatttaaatgtggaaatg 746
           ||||||||||||||||||||||||||
Sbjct: 921 ttattttgcatttaaatgtggaaatg 946


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1146
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1136
Effective search space:   836096
Effective search space used:   836096
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no141_j04.g1 MSMg01no141_j04.g1 CHROMAT_FILE:
MSMg01no141_j04.g1 PHD_FILE: MSMg01no141_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:07 2005
         (779 letters)



>mm_chr17_60226940_60228118
          Length = 1179

 Score = 1468 bits (759), Expect = 0.0
 Identities = 774/779 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtaaaagaaacccaactgagagaagattctattggtccatattctacccttgcttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 979 tgggtaaaagaaacccaactgagagaagattctattggtccatattctagccttgcttac 920

                                                                       
Query: 61  aaaagaactgcctagaatagtgccaatagcagaaagaaacacatgacctcagtctattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aaaagaactgcctagaatagtgccaatagcagaaagaaacacatgacctcagtctattaa 860

                                                                       
Query: 121 attctattctgcctaatattttataactagcatcagtgaattaatctataaatctccctt 180
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 859 attctattctgcctaatattttgtaactagtatcagtgaattaatctataaatctccctt 800

                                                                       
Query: 181 ggtaattaacagctcctaacagtgtgggctatggtcttacactatcgtggttcggacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ggtaattaacagctcctaacagtgtgggctatggtcttacactatcgtggttcggacttt 740

                                                                       
Query: 241 tgcagggcataggttgacactgtgactcaccttggaatctagagctagtctatcctctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgcagggcataggttgacactgtgactcaccttggaatctagagctagtctatcctctat 680

                                                                       
Query: 301 tataaccagtcctgagcataatctaccatattctaacctaggctattttacctagaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tataaccagtcctgagcataatctaccatattctaacctaggctattttacctagaaggt 620

                                                                       
Query: 361 atatgagtctataaccaccacaaagaagaaacaggaaaaactaccctttctaggtacccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atatgagtctataaccaccacaaagaagaaacaggaaaaactaccctttctaggtacccc 560

                                                                       
Query: 421 ctgtttcattctgaaaaataaatgcaaatttctaaaaagtattaattgggattggccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgtttcattctgaaaaataaatgcaaatttctaaaaagtattaattgggattggccttt 500

                                                                       
Query: 481 tgtgccaaaactatgaccaggcaacaatatgcttgaagggctggacttgggtgacattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtgccaaaactatgaccaggcaacaatatgcttgaagggctggacttgggtgacattca 440

                                                                       
Query: 541 atatgaaacgatagaaatgacatgatacttagaattaaaataatcaataagtttacaatt 600
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 439 atatgaaacgatagaaatgacttgatacttagaattaaaataatcaatgagtttacaatt 380

                                                                       
Query: 601 tctggaaaataagcataagaatgctatattataaatagtaggatgaacatacactgctta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctggaaaataagcataagaatgctatattataaatagtaggatgaacatacactgctta 320

                                                                       
Query: 661 aagaccaaataatgtcatatactcaaatatcaataacttcaatagacaaaggcttcaatt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagaccaaataatgtcatatactcaaatatcaataacttcaatagacaaaggcttcaatt 260

                                                                      
Query: 721 agatggtcagtctaaaagttagacctccaaggttcacgttgaatggtagagatcacata 779
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agatggtcagtctaaaagttagacctccaaggttcacgttgaatggtagagatcacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 779
Length of database: 1179
Length adjustment: 10
Effective length of query: 769
Effective length of database: 1169
Effective search space:   898961
Effective search space used:   898961
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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