BAC Information

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BAC

Clone NameMSMg01-142I10
Chromosome17 (Build37)
Map Location 56,345,670 - 56,491,068
singlet/doubletdoublet
Overlap geneDpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e
Downstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142I10.T7 (MSMg01no142_i10.b1)MSMg01-142I10.TJ (MSMg01no142_i10.g1)
ACCAG347113AG347114
length1,3021,387
length of high quality
(start - end)		267 (131 - 397)144 (139 - 282)
definitionCHROMAT_FILE: MSMg01no142_i10.b1 PHD_FILE: MSMg01no142_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:19 2005CHROMAT_FILE: MSMg01no142_i10.g1 PHD_FILE: MSMg01no142_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,490,802 - 56,491,068)(56,345,670 - 56,345,812)
sequence
NNGGGCTATGGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCA
TCCATGGTGGGGCGCCCATTAAGGATCTTACAGNTGGGGNTCTGGGCGCT
GTGGCCCTCGGACCCCATGGCACCCCCCACAGTGGAGTTACACCTGTGAG
GAGATAAGCGCAGTCAGCATAGCTCTGCCATCTCCACCTCCAAGCCTCCC
TTGGAGGCAACGAAATACCCACAGCTCCTGAGGGCAACAGCAGGCAGCCG
TGCCAGGCCAGCAAACCACAAAGCCCCATACTCCCACCAGTCAAAAGCCA
AGGTGACACCGGTTGAGTAAACACATAGGAACCCTCCTTCTAAAGCTGAC
GGGGTCCCAGAAGCTGTGTATTTTCCAATCAGAGGCCCCCTGGAGCCCAT
TTCTGTTCTCAGCAGGGACCTTCCCATGTAGACCTTGTAGCCTTACGCCA
CCACGTCACCCAGGAGCCCTGTGCACATGTGAGAGCACACTGGGCTTGTT
CAGAGGGCTCCACTTGTGCACAGGAGCCAACTGTTTGAAACCTGGACTCC
ATCAGCTATTCTTAGAGCCCTGGATCAGGAGGGCAAATCCATCCTGTCTG
AGCCAGTCCAAGCCACAGTCAATATCTACTTTACTGTGCTGGCCTCCTAC
CTGTCTCTTGTTAAGTGATCTTCTCAGTCTGGTGCCTTCTCCTAATCGTT
CATTCATTTGGTCTTGCTTCCTAGTGTCCAGAAATGTTTGTTGTATTTCC
CTCTTCCTATATAACTGCCTCTCCTCTTTTTTTTTTCTTTTTATTTTCTG
TCCCCCATTCTTCTTCTTATATATTATTTTCCTTTTCTTTTCCCTTTTAT
TTTCCTCTTTTCTGTTTTTTTTTTTCTTATTTATTTTTTTATTCTTTTTT
TTTTCTTTTTTTCTTTTATTTCCTCTTTTTTTATTCTCTACCTTCTTCTT
TCTCTTATTTCCTTCTTATTTCTCTTCTTATTTTATTTTTCTTTCTCCTT
TTTCTTTTTTCTTTTCTTTTTTCTTTATTATCTATCCTTTGTTTATTTCG
CTTTTTATTTCTATTTTTTATTTTTATTAATCTCTTTTTTTTCTCTTACT
CTCTCCTCTACTTTTCTTTATTCTTTATTTTTTTTTCTTTTCTTTTTCTT
TTCTTCTCTTCTCTATTCTTTACTCATCTTCTCTCTGTGTTCTCTTTTCT
TTGTCTCTTTGGATCTTATTTGCTCTTTTTCTTATTTTATTTTTATTCCG
TCTTATCCTATCTTCTTATCTCATATTTCCCTTCTTCATTATCTATTACA
TC

TTTTCAGCTAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAACCTCCCAGAGGATAATTCTGAACTC
CCAATCATCCTGTCTCCACCTCAAGCCCCCAGCTGGNAGGCATGCACAAC
CCTGCCTGGTAAGATGGGATGGAACCTAGGGCCTCCTGGGTGCCAACTGA
GTCCTCCATGCAGTAATCCTCAGGACTGGGCCTGGGTCCAGCTCAGAGCT
GCGGTGTGGAGGAGGCAGATGTGAAAGCCTGTGTTCCTGTCCCATCATTG
AGCTGTGCTCAATGTTACTCATTATTCTATATGCTTCTACCCAACTGTTA
TTTATTTGTCTATCATGCTAGTCTATCCGCTTATTCCCTGCGATGATGTT
TTTTTTTTTTACCACCACTCTCTCCTCTTTCTTTCTTGTTTTTTCTTCCC
CCCCCTTTTTTTCCTTCCCCCCCCTCCTCTCTTCCTTTCTTTTTTTTTAT
TTTCTCCCCTCTTTCTTTTTTTCCTTCTCTTCTCTTCCTCTCTTTTTTTC
TCTTTCTCTTTTTTCTTCCTTTTTTCTTCTTCTTTCCCTTTCTCTCCTCT
TTTTCTCTTTTCTTCCCCTTTTTCCTTCCATCTTCTCTTCTTTCACTCTA
TCTTCTTTTTCCTTCACTTCCTTTTCTTCTTTCTTCCTTCTCTCTCTTTC
TCCCTTTTTTTCTCTTCTTCTCTCATCTACTACTTCTTCCTTCTCCTCCT
CTTTCTTCTTCTTCTTCTCTTTTCTCTTTTTTTTCTCCTTTCTTTCTCTT
TTTTCTTTTCTCTCCTCCTTNCTCCCTTTTTTTTCTTTTTTCCCCTTCCT
TCCCCTTTTATCTTTTTCCTTTTCTTCTTCTCTTTACTCTTTCTTTTCCT
CCTCTCTCTTACCTCCTCTCTCTCTTTTTCATTCTTTTACTTTTCTTCTC
TCTTTTCTTTCCTTTTTCCTCTTTCCTCTTTTCTCCTCTCTCCCTCCTCT
TCTCTTTATTCCTTTTTTCTCTCTTTCCCCTTTTCTTTTTCTCTTCATCT
TCCTCCTCTTCTCTTTCTCTTCTTCCTCTCTTTCTTCCCCTCATCTATAC
TTTTTTTTATCTTTTTTCTCTTCTCTCCTCCCACTCTTTCTCCTTTCTCT
CTTTTCTTTTACTCTACTCTCCTCTTCATCTTCTTTTTTCCTCTCTCCTC
TCTTCTCTCCTTCTCCATCTTCTTCTTCTCTTTCTCTTCTCTCTTTTCTT
CTACTTTTCTTCACTCTTCATCCTTCTCATCCCCTCCTCTCTTATCTTTT
CTCTACTCCCTTCCCTCCCTCTTTCCTCCTCTTTCTCTTTCTTTTATCTC
CTTCCTCTCTCTTTTCTTTCTCTTATCTCTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_i10.b1 MSMg01no142_i10.b1 CHROMAT_FILE:
MSMg01no142_i10.b1 PHD_FILE: MSMg01no142_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:19 2005
         (267 letters)



>mm_chr17_56490602_56491268
          Length = 667

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggagttacacctgtgaggagataagcgcagtcagcatagctctgccatctccacctc 60
           ||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct: 467 agtggagctacacctgtgaggagataagagcagtcagcatagccctgccatcaccacctc 408

                                                                       
Query: 61  caagcctcccttggaggcaacgaaatacccacagctcctgagggcaacagcaggcagccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caagcctcccttggaggcaacgaaatacccacagctcctgagggcaacagcaggcagccg 348

                                                                       
Query: 121 tgccaggccagcaaaccacaaagccccatactcccaccagtcaaaagccaaggtgacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgccaggccagcaaaccacaaagccccatactcccaccagtcaaaagccaaggtgacacc 288

                                                                       
Query: 181 ggttgagtaaacacataggaaccctccttctaaagctgacggggtcccagaagctgtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggttgagtaaacacataggaaccctccttctaaagctgacggggtcccagaagctgtgta 228

                                      
Query: 241 ttttccaatcagaggccccctggagcc 267
           |||||||||||||||||||||||||||
Sbjct: 227 ttttccaatcagaggccccctggagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no142_i10.g1 MSMg01no142_i10.g1 CHROMAT_FILE:
MSMg01no142_i10.g1 PHD_FILE: MSMg01no142_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:19 2005
         (144 letters)



>mm_chr17_56345470_56346013
          Length = 544

 Score =  269 bits (139), Expect = 6e-77
 Identities = 142/143 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcatgcacaaccctgcctggtaagatgggatggaacctagggcctcctgggtgccaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcatgcacaaccctgcctggtaagatgggatggaacctagggcctcctgggtgccaact 260

                                                                       
Query: 61  gagtcctccatgcagtaatcctcaggactgggcctgggtccagctcagagctgcggtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtcctccatgcagtaatcctcaggactgggcctgggtccagctcagagctgcggtgtg 320

                                  
Query: 121 gaggaggcagatgtgaaagcctg 143
           ||||| |||||||||||||||||
Sbjct: 321 gaggaagcagatgtgaaagcctg 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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