BAC Information

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BAC

Clone NameMSMg01-143I18
Chromosome17 (Build37)
Map Location 39,984,949 - 39,985,255
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143I18.T7 (MSMg01no143_i18.b1)MSMg01-143I18.TJ (MSMg01no143_i18.g1)
ACCAG347865AG347866
length687705
length of high quality
(start - end)		618 (70 - 687)335 (75 - 409)
definitionCHROMAT_FILE: MSMg01no143_i18.b1 PHD_FILE: MSMg01no143_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:08 2005CHROMAT_FILE: MSMg01no143_i18.g1 PHD_FILE: MSMg01no143_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAAACACTGAAAGAATTGAATTTCAGATCTACCTGAATAGGGCG
ATGCAAGACTACCCACTGCTCCACTTTATCCAGAATGTCAAAAATAGAGT
AGACTCCTTAAAACTTCCACCCACTGTAATTTAGCAACACCCAGTGCTGC
TTCAGGCAGAGCAAAAGACCCAAAAACTGCTCACTGCCTCCAATTCTGAC
CTAATGTCAGAGATACCGAATGCAGAACCCCAACAATGGGGCCAGCATTG
TTTGCAGTTGAGATCCAACTAAAATAACATCTCACCCATCGTGGGGATCG
AACCTATGACCCTGAGATTAAGAGTCTCATGCTCTACCGACTGAGCTAGC
TGGGCAACTGCTCTCTAGCTTAGAAGTTTACTAATTGTGACCTCAATGTA
TTGGCCTGGCAAAGTAAATGAAGCTATTTCAGATTGAGGGCAGCTTCAAA
AACAAGAAGTTTCACCTCCACACAGCAGACACATGCCTGGGACACTGATC
TACACACTTTAAGACTGAACTGCCTGCTCATTCTCCTTCTCCTTCTCCTA
TTTCCACCCGAAACTAGAACCTCTAGTCCCTGCCCCCTAACCACTGGGTA
ACCATCACCAGAGCCAGAACTTGTCTACCACTTGCTC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGTAAGTGCGGGTCATAAGCTTGC
GTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGAT
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACG
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG
TAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAA
CGGGAGACTGTGGAGGAGCGTCGGCGTGGCCCGCTCTCCCCGTCTTGTGT
GTGTCCTCGCCGGGAGGCGCGTGCGTCCCGGGTCCCGTCGCCCGCGTGTG
GAGCGAGGCGTCTGCACCCCCCNGCGTGANGTTTTTTTGCCCGCCCCCCC
CGCGTCTTTATTTATACCATACGCTTCCTTCCTTTTTTCATATTCCCTCT
CTTCTTATCGTCTTTTGTTTCTTTCCCCCTATATTTTTCCCCCCCCCCCC
TTTCTTTTCTCCCCCCCCCGTTTTATCCCGTTCTGGCCTGCGTTCCCGTC
TTCTCTCTTTGTTTCTTTCTTTTCCTTTTTTACTCTTATTCGCTTTTTCT
CATCCCTAGCTCGATCCGTTCTCAACATATTGTAACTCGAAGATTTTTCT
GCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_i18.g1 MSMg01no143_i18.g1 CHROMAT_FILE:
MSMg01no143_i18.g1 PHD_FILE: MSMg01no143_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:08 2005
         (335 letters)



>mm_chr17_39984722_39985456
          Length = 735

 Score =  507 bits (262), Expect = e-148
 Identities = 303/334 (90%), Gaps = 27/334 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtaagtgcgggtcataagcttgcgttgattaagtccctgccctttgtacacaccgcc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ccagtaagtgcgggccataagcttgcgttgattaagtccctgccctttgtacacaccgcc 287

                                                                       
Query: 61  cgtcgctactaccgattggatggtttagtgaggccctcggatcggccccgccggggtcgg 120
           |||||||||||||||||||||||||||||||                           ||
Sbjct: 288 cgtcgctactaccgattggatggtttagtga---------------------------gg 320

                                                                       
Query: 121 cccacggccctggcggagcgctgagaagacggtcgaacttgactatctagaggaagtaaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccacggccctggtggagcgctgagaagacggtcgaacttgactatctagaggaagtaaa 380

                                                                       
Query: 181 agtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggagactgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacgggagactgtgga 440

                                                                       
Query: 241 ggagcgtcggcgtggcccgctctccccgtcttgtgtgtgtcctcgccgggaggcgcgtgc 300
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcggcggcgtggctcgctctccccgtcttgtgtgtgtcctcgccgggaggcgcgtgc 500

                                             
Query: 301 gtcccgggtcccgtcgcccgcgtgtggagcgagg 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcccgggtcccgtcgcccgcgtgtggagcgagg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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