BAC Information

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BAC

Clone NameMSMg01-143P13
Chromosome17 (Build37)
Map Location 10,709,940 - 10,857,180
singlet/doubletdoublet
Overlap genePacrg
Upstream geneEG667170, 4932702K14Rik, Qk, LOC675815
Downstream genePark2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143P13.T7 (MSMg01no143_p13.b1)MSMg01-143P13.TJ (MSMg01no143_p13.g1)
ACCAG348172AG348173
length705709
length of high quality
(start - end)		531 (43 - 573)606 (74 - 679)
definitionCHROMAT_FILE: MSMg01no143_p13.b1 PHD_FILE: MSMg01no143_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:40 2005CHROMAT_FILE: MSMg01no143_p13.g1 PHD_FILE: MSMg01no143_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,709,940 - 10,710,466)(10,856,871 - 10,857,180)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATTATCACGGTACTTTGACTATTTACTTGGGAAAGTGGTTGGACAG
CATGTAACCGAGAGGCGGATCCAGATGTGGGATCTGGTGATTGCCGGTGA
ACTACCGTGGCTGGAACCGTCAGAGCGCCGCCCTGAGCTGCCTGAACAGA
CCTGGTGTTTATGCCTAATTCTGCCACAATGCCATCCTGGCTGCAGACAT
GCTTTCTCTCTGGCCTCTCTCCTCCCATAAGCCTGTGCCAGGGCTGACTG
CTAAGGGTGCTGCCATTTACGTTGGCCTGGATCTAGGTATCCCAGAGAGG
ACTTGGAAGGGTTAACATCTGAGTGTTCCTTCTGCATATCCCCTCAAATG
GTCACCTCCTTCCGCAGACACAGCATCACTGGGTCAAAGTTGCATTGGCT
TCCTGAGTAGGCCTTATGCTCTTTGTCTTCTGACCATTGCTTGGAATCGT
TCACCTCATCTGTCCAGGTTGTGTTTGGCCTGTGGAGCCCCATGGTGTGG
CCGAGAACCGTGCTGTCTGAGGTGGGGTTAGCTCCATGCATCTTATACTC
AGTAGTAATTGACTTGCTAAGCCTAAAAACGATCGGCTATTTTCCTGACT
GTACTCTGGTTTCTCTCATCAAACCTCTTTCTCTTTTCATCTTGTTGATT
TCTAA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGAACTGCCACAGTAAGAAAGGGCA
GATTTGGGGCACAAAGGGTCATCTTAGAAGCATCTTATGCCCTCCGAAGG
TCAGAGAGCGGGACCTGGGTGACCAACACTCTTCTGGACCACGTGACCAC
GACACCCCACTTAAGAGGACCATGAGAACTAGTCCCTCAGCATAGGTCCC
AGAGTTCTCCATGCTAAGGAGGTATCTAGATGGGCCAGCCCGAGGGTTTA
GCCAATAAGTTTCCCTTATAGGGCATTCCTTCCTGCAAAAGATATTTAAT
CTCTGGGCTACCCTAAGTTGTATGCATCTATTTTTCCACCATGAATAAAC
AGTTTGGACAAGCAAGGACTGTCTCTCTCATCAAGAACCGCTGTAGAGGG
AAGCCTTTCTTACTGAGCTGTGCTGCCTGAGTCTCCTGCAGAATGCCCCT
CTGTGCTCCTGACACTCACCCCTAAGCCGGATCCCTCTGTCCTAGGCTCA
TGGCCAGCCTGAAGCCCCCCACTCCCTTCTCAACCCCTTGAAGTTCCCAG
TGGCTTCTAGGTGTCCAAGAGTTAGGGAACCCCAGCCCCAGCCCCAGCCC
CAGCCCCCAGCCCCAGCCCCAGCCCCAGCCTCAGCCCCTAGTCTCAGTCT
CGAGCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_p13.b1 MSMg01no143_p13.b1 CHROMAT_FILE:
MSMg01no143_p13.b1 PHD_FILE: MSMg01no143_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:40 2005
         (531 letters)



>mm_chr17_10709736_10710666
          Length = 931

 Score =  934 bits (483), Expect = 0.0
 Identities = 516/527 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacattatcacggtactttgactatttacttgggaaagtggttggacagcatgta 64
           |||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcacattaacagggtactttgactatttacttgggaaagtggctggacagcatgta 264

                                                                       
Query: 65  accgagaggcggatccagatgtgggatctggtgattgccggtgaactaccgtggctggaa 124
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accgagaggcagatctagatgtgggatctggtgattgccggtgaactaccgtggctggaa 324

                                                                       
Query: 125 ccgtcagagcgccgccctgagctgcctgaacagacctggtgtttatgcctaattctgcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccgtcagagcgccgccctgagctgcctgaacagacctggtgtttatgcctaattctgcca 384

                                                                       
Query: 185 caatgccatcctggctgcagacatgctttctctctggcctctctcctcccataagcctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatgccatcctggctgcagacatgctttctctctggcctctctcctcccataagcctgt 444

                                                                       
Query: 245 gccagggctgactgctaagggtgctgccatttacgttggcctggatctaggtatcccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gccagggctgactgctaagggtgctgccatttacgttggcctggatctaggtatcccaga 504

                                                                       
Query: 305 gaggacttggaagggttaacatctgagtgttccttctgcatatcccctcaaatggtcacc 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggacttggaagggttaacatcagagtgttccttctgcatatcccctcaaatggtcacc 564

                                                                       
Query: 365 tccttccgcagacacagcatcactgggtcaaagttgcattggcttcctgagtaggcctta 424
           |||||  | ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 565 tccttttggagacacagcatcactgggtcaaagttgcattggctccctgagtaggtctta 624

                                                                       
Query: 425 tgctctttgtcttctgaccattgcttggaatcgttcacctcatctgtccaggttgtgttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctctttgtcttctgaccattgcttggaatcgttcacctcatctgtccaggttgtgttt 684

                                                          
Query: 485 ggcctgtggagccccatggtgtggccgagaaccgtgctgtctgaggt 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggcctgtggagccccatggtgtggccgagaaccgtgctgtctgaggt 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_p13.g1 MSMg01no143_p13.g1 CHROMAT_FILE:
MSMg01no143_p13.g1 PHD_FILE: MSMg01no143_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:40 2005
         (606 letters)



>mm_chr17_10856871_10857876
          Length = 1006

 Score =  553 bits (286), Expect = e-161
 Identities = 304/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaactgccacagtaagaaagggcagatttggggcacaaagggtcatcttagaagcat 60
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 310 caggaactggcacagtaagaaagggcagatttggggcacagagggtcatcttagaagcat 251

                                                                       
Query: 61  cttatgccctccgaaggtcagagagcgggacctgggtgaccaacactcttctggaccacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cttatgccctccgaaggtcagagagcgggacctgggtgaccaacactcttctggaccacg 191

                                                                       
Query: 121 tgaccacgacaccccacttaagaggaccatgagaactagtccctcagcataggtcccaga 180
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 190 tgaccacggcaccccacttaagaggaccataagaactagtccctcagcataggtcccaga 131

                                                                       
Query: 181 gttctccatgctaaggaggtatctagatgggccagcccgagggtttagccaataagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gttctccatgctaaggaggtatctagatgggccagcccgagggtttagccaataagtttc 71

                                                                       
Query: 241 ccttatagggcattccttcctgcaaaagatatttaatctctgggctaccctaagttgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 70  ccttatagggcattccttcctgcaaaagatatttaatctctgggccacactaagttgtat 11

                     
Query: 301 gcatctattt 310
           ||||||||||
Sbjct: 10  gcatctattt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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